Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g01374 ATGGTTCTTGGATGGAGAAGAAGAAAGAACTGCGGTCGCAAGGACAAGCTTCGTCTCGAGCTCGTCGTTCCCAACCACTTCCGGTGTCCGATTTCTCTCGATCTAATGAAAGACCCTGTCACATTGTCAACCGGAATCACCTACGATCGTGACAACATCGAAAGGTGGTTCCTTGACGGCAATTTCACCTGCCCTGTTACCAATCAGGTTCTCAGGAGCTTCGATCTCATTCCCAATCACGCTATTCGCATCATGATTCAGGAGTGGTGTGTCGAAAATCGACTACATGGGATCGAGAGAATCCCAACCCCAAGAATTCCCATTTCGTCGGCCCAAGTCGCCGAGCTTCTTCTTCATGTGAAATCGTCGGCGAGGCGTTTGGATCAATATGGTTGCCTTGAATTGGTTCAGAAAATGGAGAAATGGGGTGAAGAGAGCGAGAGGAACAAGAAGTGTATAGTTGAAAATGGAGCTACTGGTGCTCTGGCCTCTGCTTTTGATTCGTTTGCGAATGATTCGATTGAGAAGAATCTTAATGTTTTGGTGGAGATTTTGTCTGCTTTGAATTGGATGTTCCCACTTCAAATGGAAGAAGCGCAGAAATGTTTGGGATCACAAGCTTCGTTACGTTGCATGGTTTGGTTTCTGAAACATCAAGATATCGCGGGAAAAGAGAAATCCATTGTTGCCCTCAGAGAGCTTCTATCGTTCGGAAACGAAGAGCATTTTAATGTTTTGGCAGAAATTGAAGGAGCCAACGAATTATTGGTGGAATTAATCATAAAAAGACTGAATCCGACCATTACAAAAGCTTCATTAGCTGTAGTTTTCTATATGGTTTCATCGCCTTCTTCTTCCTCAAGCAACAAGATGAAACAGAGATTCATCGAATTGGGGTTGGTCTCTGCTTTGTTGGAGATTCTTATGGATTCAGAAAGAAGCCTTTGTGAGAAGGCTTTGGCAATATTTGATTCACTCTGTTCTTGCAAGGAAGGAAGAGAGAAAGCTTACAGTAACGCGTTGACGATCCCTGTGTTGGTGAAGAAGATACTGAGAGTTTCAGCTTTGGCTACAGAATGCTCTGTTTCTGCAATATGGAAGCTGTGCAAGAATGGCGGAGAAGAGAAAGAAGAAGAAGATGATGATGATGAAGAAGAAGAAGAAGCTATGGTAGAGGCAATGCAAGTTGGGGCGTTCCAGAAGCTTCTAGTAGTGTTGCAGATTGGGTGTGGAGATGAAACGAAGGTGAAAGCAACAGAGCTTCTAAAACTTCTGAATCGATATGGATCAGGCATGGAGTGTGTAGACTCAGATTACAAGAACCTCAAGAGATCACATTAA 1341 0.4377 MVLGWRRRKNCGRKDKLRLELVVPNHFRCPISLDLMKDPVTLSTGITYDRDNIERWFLDGNFTCPVTNQVLRSFDLIPNHAIRIMIQEWCVENRLHGIERIPTPRIPISSAQVAELLLHVKSSARRLDQYGCLELVQKMEKWGEESERNKKCIVENGATGALASAFDSFANDSIEKNLNVLVEILSALNWMFPLQMEEAQKCLGSQASLRCMVWFLKHQDIAGKEKSIVALRELLSFGNEEHFNVLAEIEGANELLVELIIKRLNPTITKASLAVVFYMVSSPSSSSSNKMKQRFIELGLVSALLEILMDSERSLCEKALAIFDSLCSCKEGREKAYSNALTIPVLVKKILRVSALATECSVSAIWKLCKNGGEEKEEEDDDDEEEEEAMVEAMQVGAFQKLLVVLQIGCGDETKVKATELLKLLNRYGSGMECVDSDYKNLKRSH 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g01374 446 PANTHER WDSAM1 PROTEIN 21 434 IPR045185 GO:0061630
Accr2g01374 446 SMART Ubox_2 26 89 IPR003613 GO:0004842|GO:0016567
Accr2g01374 446 CDD RING-Ubox_PUB 24 76 IPR045210 -
Accr2g01374 446 Gene3D - 144 286 IPR011989 -
Accr2g01374 446 ProSiteProfiles U-box domain profile. 22 96 IPR003613 GO:0004842|GO:0016567
Accr2g01374 446 FunFam RING-type E3 ubiquitin transferase 23 94 - -
Accr2g01374 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 99 IPR013083 -
Accr2g01374 446 Gene3D - 287 435 IPR011989 -
Accr2g01374 446 Pfam U-box domain 23 94 IPR003613 GO:0004842|GO:0016567
Accr2g01374 446 SUPERFAMILY RING/U-box 22 99 - -
Accr2g01374 446 SUPERFAMILY ARM repeat 145 429 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g01374 Accr-Chr2 43777413 43778753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g01374 20 444 U-box Gene Family AT5G37490 45.327 3.99e-113 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g01374 - - gmx:100817623 605.52