Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g01349 ATGTCGTCATCACTCCCAACTTCGCATCAGCAGTTCTCCACCGCCGCCGCCGCAGAGAATAATGCCTCTGCAACTACAAACAAAAGAAAAAGAAGACCGGCCGGAACACCAGATCCGGATGCGGAGGTGGTGTCTTTGTCGCCGAAGACGCTATTGGAATCGGACCGGTACGTGTGCGAGATCTGTAACCAGGGGTTTCAGAGGGACCAGAACCTGCAGATGCACAGGAGGAGGCACAAGGTGCCGTGGAAGCTGCTCAAGAGGGAGACGCCGGTGGTGAGGAAGAGGGTGTTTGTGTGCCCGGAGCCCACCTGCTTGCACCACGACCCGTGCCACGCCCTCGGCGACCTCGTCGGAATCAAGAAACACTTCCGCCGCAAACACAGCAACCACAAGCAATGGGTCTGCCACCGCTGCTCCAAGGCCTACGCCGTCCAGTCCGACTACAAGGCCCATCTCAAGACCTGTGGCACTCGCGGCCATTCCTGTGATTGTGGCCGAGTCTTCTCCAGGGTGGAGAGTTTCATCGAACACCAAGATGCGTGCAACATGGGTCGGCTCCGGTCGCAGCAGCCACAGCAACCGGCGTGTCTATCTCGAACTGCATCGAGCCCGAGCCAGTCGAGCGAGACCAATTTCAGCGCCGGTCCGGCCTGGCCTACTCCGCCCGGTCTGGTGATACCAAAGCCAACAACAACGGCGGAACCCACATTCTTCCAGAACAATAAGAACCCTATTATTGCTGATCAAACCTCATCCAAAACCAACACCAACACCAACAACCAAAGTAGCAACAAGAAGCTCTACCCCAACTTGGACCTTCAGCTCTCAACCGCCACGCCCAACGTCGAGGACACCCACTCGACGCAGCTACAGCTCTCGATCGGTTCGTCGACGGACATGAGCGACAAAAACGAATCAAACAGGAACAATAATAATTCATCCCCAAAGGAGAGCAGTAACAGCAGCGATAAGCCGCCAGGCGCGGTGGCAGCGGCGTTGATGGTGGAGAAAGCCTACGCGGAGGAGAGGAGGAAGGAGGCCAAGAGGCAGATGGAGGCGGCGGAGCAAGAGTTTGCGAACGCGAGGAGATTAAGGCAGCAAGCTCAAGCGGAACTGGATAAAGCATATGCATTGAAAGAGCAAGCCATTAAGCAGATCAATTCCACTATGCTTCAGATCACTTGTCATTCTTGTAAGCAACTGTTTCAACAGCAAGCTCATAAATTAATAACGGAAGGTGGTGGCCAGGTATTAGAAGACAACAATAACGGCAAAGATCAAAACCACTAA 1293 0.546 MSSSLPTSHQQFSTAAAAENNASATTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCHRCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRSQQPQQPACLSRTASSPSQSSETNFSAGPAWPTPPGLVIPKPTTTAEPTFFQNNKNPIIADQTSSKTNTNTNNQSSNKKLYPNLDLQLSTATPNVEDTHSTQLQLSIGSSTDMSDKNESNRNNNNSSPKESSNSSDKPPGAVAAALMVEKAYAEERRKEAKRQMEAAEQEFANARRLRQQAQAELDKAYALKEQAIKQINSTMLQITCHSCKQLFQQQAHKLITEGGGQVLEDNNNGKDQNH 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g01349 430 Gene3D Classic Zinc Finger 45 130 - -
Accr2g01349 430 Coils Coil 331 386 - -
Accr2g01349 430 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Accr2g01349 430 MobiDBLite consensus disorder prediction 193 270 - -
Accr2g01349 430 MobiDBLite consensus disorder prediction 293 326 - -
Accr2g01349 430 MobiDBLite consensus disorder prediction 193 216 - -
Accr2g01349 430 FunFam protein indeterminate-domain 12-like 36 104 - -
Accr2g01349 430 MobiDBLite consensus disorder prediction 1 46 - -
Accr2g01349 430 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 10 387 IPR031140 -
Accr2g01349 430 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Accr2g01349 430 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Accr2g01349 430 SMART c2h2final6 134 161 IPR013087 -
Accr2g01349 430 SMART c2h2final6 98 128 IPR013087 -
Accr2g01349 430 SMART c2h2final6 57 79 IPR013087 -
Accr2g01349 430 MobiDBLite consensus disorder prediction 233 270 - -
Accr2g01349 430 MobiDBLite consensus disorder prediction 1 30 - -
Accr2g01349 430 MobiDBLite consensus disorder prediction 293 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g01349 Accr-Chr2 43405658 43407823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g01349 19 407 C2H2 Transcription Factor Family AT2G01940 55.419 5.40e-142 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr2g01349 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g01349 K25871 - gmx:100800187 528.865