Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g01203 ATGGAAGAAAAAGATAGTTTTTTCTCCGGGCTTACCGTGAAGGCTAACGATGTTCCGGAAAGTCACCATGTAACTCCCAGAAGTGAAAACTATGGACTATTTGGCGGGCCCACAGGGGCATCGCCAGCCCCAGTGCCAGCACCAGCACCAGCTCCGACTACGGCTCCAACTTCATCTCCGGCTTCAGCTAGAGCTCCAGTGCCAGTTTCAGCTTCAGCGCCGGAGCCGGTGAGTGTGGCGGCGGCGACAGGGAGTACGGATGTAGTAAAGAAGAAAAGGGGAAGGCCTAGGAAGTACGGTCCTGATGGTAAATTAGCGTTGGCGTTGTCGCCGATGCCGATTTCGTCTTCAATTCCGTTGACTGGGGACTTCTCAATGTGGAAACGGGGTAGAGGACGGCCAGTTGAATCGGTCAAGAAGTCGTTTAAGTGCGATTTTGAAAGCTCTGGACCAGGTGATGGGATTGCATACTCAGTTGGTGCCAATTTCACACCCCATGTGCTTACTGTTAATGCTGGCGAGGATGTTAATATGAAGGTCATGTCCTTCTCTCAACAGGGATCTCGTGCTATTTGTATTCTTTCTGCAAATGGAACAATTTCAAATGTTACACTGCGTCAACCAACTTCTTCTGGGGGTACCTTAACATATGAAGGGCGATTTGAGATTCTTTCTTTGTCTGGTTCATATATGCCTTCTGAGAATGGTGTGACTAGAAGTAGATCTGGTGGGATGAGTGTCTCTTTGGCGGGCCCAGATGGTCGAGTAGTGGGAGGCGGCCTTGCTGGTCTGTTGGTAGCAGCAGGTCCTGTTCAGGTTGTTGTGGGAAGCTTTCTTCCAGGCCACCAGCAGATGCAGAAACCCAAGAAACAAAAGACGAATCATTTTTCGCCTGTCACATCTGGACATTATAATCCCATCCCAGTTGACGAAATAAAAATCAGCTTCGGAGGAGTAAAGCCCATTATGACTCCTGCTGCATTTCAAGCTGCCGACAACAACAACAACAACGCTTCTTTTAACAACATCCAGGGCTCTAGCAACTCATCTGCTGATGACGATGACGACGACGACGACGATGATGATACACTTTATCCTGAAAAGGACTCTAACCCCAGCCAAACAAATGCTGGAGTAGCCTGCTAA 1146 0.4895 MEEKDSFFSGLTVKANDVPESHHVTPRSENYGLFGGPTGASPAPVPAPAPAPTTAPTSSPASARAPVPVSASAPEPVSVAAATGSTDVVKKKRGRPRKYGPDGKLALALSPMPISSSIPLTGDFSMWKRGRGRPVESVKKSFKCDFESSGPGDGIAYSVGANFTPHVLTVNAGEDVNMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSENGVTRSRSGGMSVSLAGPDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQMQKPKKQKTNHFSPVTSGHYNPIPVDEIKISFGGVKPIMTPAAFQAADNNNNNASFNNIQGSSNSSADDDDDDDDDDDTLYPEKDSNPSQTNAGVAC 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g01203 381 MobiDBLite consensus disorder prediction 335 349 - -
Accr2g01203 381 MobiDBLite consensus disorder prediction 335 381 - -
Accr2g01203 381 MobiDBLite consensus disorder prediction 41 55 - -
Accr2g01203 381 ProSiteProfiles PPC domain profile profile. 160 299 IPR005175 -
Accr2g01203 381 SMART AT_hook_2 90 102 IPR017956 GO:0003677
Accr2g01203 381 SMART AT_hook_2 128 140 IPR017956 GO:0003677
Accr2g01203 381 Pfam Plants and Prokaryotes Conserved (PCC) domain 165 278 IPR005175 -
Accr2g01203 381 SUPERFAMILY AF0104/ALDC/Ptd012-like 162 284 - -
Accr2g01203 381 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 54 350 IPR039605 GO:0003680
Accr2g01203 381 MobiDBLite consensus disorder prediction 350 365 - -
Accr2g01203 381 CDD DUF296 164 278 IPR005175 -
Accr2g01203 381 Gene3D - 165 296 - -
Accr2g01203 381 MobiDBLite consensus disorder prediction 284 301 - -
Accr2g01203 381 FunFam AT-hook motif nuclear-localized protein 1-like 165 296 - -
Accr2g01203 381 MobiDBLite consensus disorder prediction 283 302 - -
Accr2g01203 381 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g01203 Accr-Chr2 40319831 40323592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g01203 70 326 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 58.271 1.23e-91 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g01203 - - pcin:129313186 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g00209 1 3821448 3824218 Accr2g01203 2 40319831 40323592 CCT
Accr1g00209 1 3821448 3824218 Accr2g01203 2 40319831 40323592 ECH
Accr2g01203 2 40319831 40323592 Accr2g01203 2 40319831 40323592 ECH