Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g01189 ATGCCTTCTCTTCCTGTCTCTGATGTTGCTCATTCCGAGACTCCCAAAGATAAGAAGGAGAAGAAGAAGAAGATGAAGAACGAGGCCCTACTTGAAGATGGGGTTTCGGCGAAGAAGAAGAAGGATAGCAAGAAGCGTAAAGCTCTGGATGTTGAGACGATGGGGAGTGAGGATGAGGCAAGGAGCGAGACGAGTTCTGAGTTGGTTGAGCCTGATACTGTGAAAGAAAAGAGGAAGAAGAAAAAGGCTAAGGTGGATGAACCTGAAGATAAAGAGCAAGAGGTTGAGAAGGAGGACCCTAATGCTATTTCAAACTTTAGGATATCGGCGCCGTTGAGGGCCAAGTTGAAAGAGAAGGGGATTGAATCGCTATTTCCTATTCAGGCCATGACTTTTGATACCGTTCTAGATGGCGCTGATTTGGTTGGTCGGGCTCGCACTGGGCAGGGTAAGACTCTTGCCTTTGTGTTACCAATATTAGAGTCTTTAACAAATGGTCCTGCAAAAGCAGCAAGAAAGTCTGGATATGGAAAGGCTCCATGTGTTCTTGTGCTCTTACCTACCAGAGAATTGGCCAAACAGGTGTTTTCTGATTTTGAAGTTTATGGTGGGGCACTGGGATTGACATCTTGCTGTTTATATGGTGGAGCTCCATATCAAGCACAAGAATCTAAACTCAAGAAGGGCGTTGATGTTGTTGTTGGAACTCCAGGACGGATAAAAGATCACATAGAGAGGAACAATCTTGACCTGAGCCAACTAAAGTTCCGTGTCCTGGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTCATTCTGGGTAAGGTAGACGATGTTAGTAAAGTTCAGACACTTCTTTTCAGTGCTACTCTGCCAAGCTGGGTTAAGAGTATTTCTATGAAATTTCTGAAATCTAATAAAAAGACTGCTGACTTGGTGGGCAATGAGAAAATGAAAGCTAGCACTAATGTTAGGCATATTGTTCTCCCGTGTTCTAGCGCTGCCAGGTCCCAACTTATTCCAGACGTTATACGTTGCTATTGCAATGGAGGCCGGACAATTATATTTACTGAGACAAAGGAGTGTGCTTCTCAGCTAGCAGGGTTGTTGCCTGGTGCACGAGCTCTGCATGGTGATATACAGCAGTCACAACGTGAGGTCACCTTGGCTGGTTTCAGGGCTGGGAAGTTTACTACATTAGTTGCCACTAATGTGGCGGCCCGTGGTTTGGACATTAATGATGTTCAGTTAATTATCCAGTGTGAACCCCCACGTGATGTAGAAGACTATATCCATCGGTCTGGGCGCACTGGAAGAGCAGGTAACACTGGAGTTGCTGTTATGCTTTTTGATCCAAGGAGGTCAAATATATCAAAGATAGAAAGAGAATCTGGTGTGAAATTTGAACACATATCTGCTCCCCAGCCTGCTGATATTGCCAAAGCTGTTGGTGGGAATGCTGCTAAAATGATAACCCAGGTGTCTGATGATATTATCCCTGCATTCAAATCTGCTGCGGAGGATCTTTTAAACAATTCAGGCTTAACAGCAGTTGAATTGCTTGCAAAAGCTCTTGCGAAGACTGTTGGTTATACAGAGATAAAGAAAAGATCACTACTCGCTTCCATGGAGAACCATGTTACATTACTTCTTGAGAGTGATCGACCCATCTACACTCCATCATTTGCATTTGGAATCTTGAGGAGATTCTTGCCTCAGGAGAAGGTTGACTCAGTGAAGGGTCTTACTCTCACTGCAGATGGAAATGGTGCTGTTTTTGATGTGTCAACTGAAGACTTGGATACCTTTCTTACTGGTTCGGAAAATGCTGATAATGTAAGTTTAGAAGTAGTGGAAGCATTGCCAAGTTTGCAAGAAAGAGAGCAATCTAGAGGTAGATTTGGCGGCGGCCGGGGCAGTGGCGGCCGGGGCGGCGGCGGCAACAGGTTTTCTGGGGGAAGGAGCGGTGGCAGATTTTCTAACGATCGAAATGGTAGGTTCTCCAACAATTCTGGAGGCGGGAGAGGTCGCGGCAACTTTGGGGCAGATAGGTGGTAA 2073 0.4534 MPSLPVSDVAHSETPKDKKEKKKKMKNEALLEDGVSAKKKKDSKKRKALDVETMGSEDEARSETSSELVEPDTVKEKRKKKKAKVDEPEDKEQEVEKEDPNAISNFRISAPLRAKLKEKGIESLFPIQAMTFDTVLDGADLVGRARTGQGKTLAFVLPILESLTNGPAKAARKSGYGKAPCVLVLLPTRELAKQVFSDFEVYGGALGLTSCCLYGGAPYQAQESKLKKGVDVVVGTPGRIKDHIERNNLDLSQLKFRVLDEADEMLRMGFVEDVELILGKVDDVSKVQTLLFSATLPSWVKSISMKFLKSNKKTADLVGNEKMKASTNVRHIVLPCSSAARSQLIPDVIRCYCNGGRTIIFTETKECASQLAGLLPGARALHGDIQQSQREVTLAGFRAGKFTTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVMLFDPRRSNISKIERESGVKFEHISAPQPADIAKAVGGNAAKMITQVSDDIIPAFKSAAEDLLNNSGLTAVELLAKALAKTVGYTEIKKRSLLASMENHVTLLLESDRPIYTPSFAFGILRRFLPQEKVDSVKGLTLTADGNGAVFDVSTEDLDTFLTGSENADNVSLEVVEALPSLQEREQSRGRFGGGRGSGGRGGGGNRFSGGRSGGRFSNDRNGRFSNNSGGGRGRGNFGADRW 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g01189 690 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 132 314 IPR014001 -
Accr2g01189 690 MobiDBLite consensus disorder prediction 11 100 - -
Accr2g01189 690 Pfam Helicase conserved C-terminal domain 354 446 IPR001650 -
Accr2g01189 690 Gene3D - 549 624 - -
Accr2g01189 690 SMART helicmild6 365 446 IPR001650 -
Accr2g01189 690 Pfam DEAD/DEAH box helicase 125 302 IPR011545 GO:0003676|GO:0005524
Accr2g01189 690 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 57 501 - -
Accr2g01189 690 MobiDBLite consensus disorder prediction 659 680 - -
Accr2g01189 690 SMART ultradead3 120 332 IPR014001 -
Accr2g01189 690 FunFam DEAD-box ATP-dependent RNA helicase 7 552 624 - -
Accr2g01189 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 458 IPR027417 -
Accr2g01189 690 Pfam GUCT (NUC152) domain 535 630 IPR012562 GO:0003723|GO:0004386|GO:0005524
Accr2g01189 690 SUPERFAMILY RNA-binding domain, RBD 539 622 IPR035979 GO:0003676
Accr2g01189 690 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 485 IPR001650 -
Accr2g01189 690 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 258 266 IPR000629 -
Accr2g01189 690 MobiDBLite consensus disorder prediction 1 100 - -
Accr2g01189 690 CDD DEADc 112 309 - -
Accr2g01189 690 MobiDBLite consensus disorder prediction 631 690 - -
Accr2g01189 690 Gene3D - 314 474 IPR027417 -
Accr2g01189 690 CDD SF2_C_DEAD 329 455 - -
Accr2g01189 690 Gene3D - 53 313 IPR027417 -
Accr2g01189 690 CDD GUCT_RH7_like 542 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g01189 Accr-Chr2 39914393 39918272 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g01189 138 485 Eukaryotic Initiation Factors Gene Family AT1G72730 31.445 6.77e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g01189 K16911 - qsa:O6P43_005503 975.311