Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g01088 ATGATAAAGAGAATCACACCCTCACTAATCTTCGTCTTCTTGCTTTTCTCGCCGACGGTCGGTGCCCAGTCAAGCCCGGCACCGGCAGCTTCTCCAAATGCTCCATTTCTTACTAACCATGTATCGTTCGCTCCGGTGATTCTTACCCTCGTGTTCGCCTTCTTCGTCGTCGGCTGCTTCGCTATCTACCTTCACCACCGCTCCTACATGGAACTCGCCACCGGAGACCCAACTGGCGTCACTGACAACTGTTGTCCAAGTGCTCCTCAAGGTATCGACCCAAAATTACTCGCCACCTTCCCCACCATTGTGTATTCCGCTGTGAAAAACATCAAATTTGGTAAAGCCGCCGCCGCGGCGGAGTGCGCCGTGTGCTTGGGCGAGTTCGACCACCATGATAAGCTCCGATTGCTTCCGAAATGTAACCATGTGTTTCACCTTCAATGTATCGACGCCTGGTTGGCCTCCCACGTGACTTGCCCCATTTGTCGTTCAAGGCTGAAGCCGGCGGAGAAGCACCGCGGAGGTGAAAACAACATTGTGATTGTAATTCCGAACGAGGTATAA 567 0.5273 MIKRITPSLIFVFLLFSPTVGAQSSPAPAASPNAPFLTNHVSFAPVILTLVFAFFVVGCFAIYLHHRSYMELATGDPTGVTDNCCPSAPQGIDPKLLATFPTIVYSAVKNIKFGKAAAAAECAVCLGEFDHHDKLRLLPKCNHVFHLQCIDAWLASHVTCPICRSRLKPAEKHRGGENNIVIVIPNEV 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g01088 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 173 IPR013083 -
Accr2g01088 188 SUPERFAMILY RING/U-box 121 171 - -
Accr2g01088 188 PANTHER RING FINGER DOMAIN-CONTAINING 24 167 - -
Accr2g01088 188 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Accr2g01088 188 CDD RING-H2_EL5-like 121 164 - -
Accr2g01088 188 SMART ring_2 122 163 IPR001841 -
Accr2g01088 188 Pfam Ring finger domain 121 164 IPR001841 -
Accr2g01088 188 FunFam E3 ubiquitin-protein ligase ATL6 82 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g01088 Accr-Chr2 36528103 36528669 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g01088 9 178 Rapid Response to Elicitors AT3G05200 42.286 2.10e-36 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g01088 K10664 - pcin:129287042 166.777