Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g01006 ATGGGAAGAGGTAGGGTTGAGCTGAGGCGTATTGAGAACAAAATCAGCCGTCAAGTGACATTTTCAAAGAGGCGAAGTGGACTGTTCAAGAAGGCACAAGAAATCTCTGTGCTCTGTGATGCTCAAGTTGCTCTTATAATCTTCTCCACCAAAGGCAAGCTCTTTGAGTTCTCCTCTGATTCCAGCTTGGATGGCATTCTGGAACGATATGAGAGACAAACGCATACGGAACAACTTGCTGAAGTTAACAATAAGGAATCTCAGGGAAACTTGTCCTTGGAATTCTACAAACTTAACACTAAGGCTAAAATCTTGGAGAAGAACATAAGGAACTATGGAGGACATGATCTTGATGTCTTGAGTTTGAGGGAGCTTCAGAACTTAGAGAACCAGATCGACACAGCTATAAAGCGTATTCGAACAAGAAAGAACCAACTGATGAATGAATCCATCTCGGAGCATCAGAAGAAGGCAAGGACATTACAGGAGCAAAACAACACACTGGCAAAGAAGGTGAAGGAGAAAGAGAAGAAACTGACTGAAAATCCACAGAAGGAAAAGTACCCTCAAGGACAAAATTTATCTGGCTTCAATGCGCCTGCGCCACAGCTACAACTTCCTACTCTAACTCTCGGTGCGAGTTTACAAGGAAGAGAAGAGGAAGAAGAGGGGGAAGCTCATCAGACGGCACCCAGAAGAAGCACTATTATGCCACCATGGATGTTGCATCACTTGATCAGATAG 744 0.4382 MGRGRVELRRIENKISRQVTFSKRRSGLFKKAQEISVLCDAQVALIIFSTKGKLFEFSSDSSLDGILERYERQTHTEQLAEVNNKESQGNLSLEFYKLNTKAKILEKNIRNYGGHDLDVLSLRELQNLENQIDTAIKRIRTRKNQLMNESISEHQKKARTLQEQNNTLAKKVKEKEKKLTENPQKEKYPQGQNLSGFNAPAPQLQLPTLTLGASLQGREEEEEGEAHQTAPRRSTIMPPWMLHHLIR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g01006 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr2g01006 247 MobiDBLite consensus disorder prediction 169 202 - -
Accr2g01006 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 173 - -
Accr2g01006 247 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr2g01006 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Accr2g01006 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Accr2g01006 247 Coils Coil 125 178 - -
Accr2g01006 247 MobiDBLite consensus disorder prediction 185 202 - -
Accr2g01006 247 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Accr2g01006 247 MobiDBLite consensus disorder prediction 216 235 - -
Accr2g01006 247 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Accr2g01006 247 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Accr2g01006 247 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Accr2g01006 247 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr2g01006 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Accr2g01006 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr2g01006 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr2g01006 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr2g01006 247 MobiDBLite consensus disorder prediction 169 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g01006 Accr-Chr2 32821816 32834382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g01006 1 236 MADS-box Gene Family AT1G26310 50.607 2.96e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Accr2g01006 K-box 2.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g01006 K09264 - vvi:100232953 280.026