Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g00966 ATGTCCTTCCGCAGTATAGTTCGGGATGTAAGGGATGGGTTTGGGAGCTTATCAAGGCGGAGTTTTGAGGTGAGGCTTCCTGGCCATCATAGGAAGTCACAAAGCTCAGTACACGAAGTGCAGGATCAAGCTCCAGTTATACAGAACAGCCGTTGGGCTAGCCTTCCACCAGAGCTTCTTCGTGATGTTCTCAAAAGATTGGAAACAAGTGAGAGTACATGGCCTGTTCGTAAACATGTAGTTGCTTGTGCTGGTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTGAGCAGTCCTGAGTTCTCTGGGAAGCTTACTTTCCCTATTTCCCTAAAGCAGCCTGGATTCAGAGATGGAACCATCCAGTGTTTCATCAAGAGGGACAAATCTAATTTGACATACCACCTTTTCCTTTGCCTTAGCCCTGCACTGCTTGTTGAAAATGGAAAGTTTCTTTTATCGGCAAAAAGGACAAGAAGAACTACGTGCACAGAGTATATTATAACAATGGATGCAGAAAACATATCAAGATCTAGTACTAGGTACATTGGAAAACTAAGGTCAAATTTTCTTGGTACCAAATTTATAATTTATGATACACAGCCTCCCTACAATAATTCTCAGCTGTCTCCACCTGGCCGAAGCCGTAGGATTTATTCAAAAAAGGTTTCTCCAAAAGTCCCTAGCGGCAGCTACAATGTTGCCCAAGTCTCTTATGAGCTTAATGTGCTAGGGACTAGGGGACCTCGGCGGATGCACTGTGCCATGTACTCCATCCCTGCATCATCTCTTGAGCCCGGTGGCATTGTCCCAGGCCAACCTGAGCTTCTTCCCCGCTCCCTTGAGGATTCATTCAGAAGTATATCCTTCTCAAAATCGATTGACAATTCAACTGAGTTTACCAGCTCGAGGTTCTCAGACATAATTGGTCCTGCTGGAAACGAAGAGGAGGAAGGCAAGGAGAGACCATTAGTCCTTAAGAACAAGGCACCAAGGTGGCATGAGCAGCTGCAATGTTGGTGCCTAAACTTCCGGGGTCGGGTGACAGTTGCATCAGTAAAAAATTTTCAGCTGATTGCGGCAACCACTCCACCTGCACCCGGTGCCCTGGCACCAGCACAGCCATCACAGTCTGACCACGACAAAATTATTCTTCAGTTTGGCAAGGTTGGGAAGGATATGTTCACAATGGATTACAGATACCCCCTATCTGCGTTTCAGGCTTTTGCCATTTGCCTGACCAGCTTCGACACAAAACTGGCATGTGAATAG 1278 0.4624 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHRKSQSSVHEVQDQAPVIQNSRWASLPPELLRDVLKRLETSESTWPVRKHVVACAGVCKSWREMCKEIVSSPEFSGKLTFPISLKQPGFRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIITMDAENISRSSTRYIGKLRSNFLGTKFIIYDTQPPYNNSQLSPPGRSRRIYSKKVSPKVPSGSYNVAQVSYELNVLGTRGPRRMHCAMYSIPASSLEPGGIVPGQPELLPRSLEDSFRSISFSKSIDNSTEFTSSRFSDIIGPAGNEEEEGKERPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATTPPAPGALAPAQPSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g00966 425 ProSitePatterns Tub family signature 2. 410 425 IPR018066 -
Accr2g00966 425 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Accr2g00966 425 SUPERFAMILY Tubby C-terminal domain-like 101 425 IPR025659 -
Accr2g00966 425 Pfam Tub family 113 420 IPR000007 -
Accr2g00966 425 PANTHER TUBBY-RELATED 39 423 - -
Accr2g00966 425 SUPERFAMILY F-box domain 44 96 IPR036047 GO:0005515
Accr2g00966 425 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Accr2g00966 425 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Accr2g00966 425 PRINTS Tubby superfamily signature 403 425 IPR000007 -
Accr2g00966 425 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Accr2g00966 425 PRINTS Tubby superfamily signature 382 401 IPR000007 -
Accr2g00966 425 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Accr2g00966 425 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Accr2g00966 425 Gene3D - 47 100 - -
Accr2g00966 425 FunFam Tubby-like F-box protein 109 425 - -
Accr2g00966 425 CDD F-box_AtTLP-like 52 96 - -
Accr2g00966 425 Pfam F-box domain 52 99 IPR001810 GO:0005515
Accr2g00966 425 Gene3D Tubby Protein; Chain A 112 419 IPR025659 -
Accr2g00966 425 FunFam Tubby-like F-box protein 47 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g00966 Accr-Chr2 26914014 26916652 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g00966 1 425 TUB Transcription Factor Family AT1G76900 68.845 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Accr2g00966 Tub 2.8e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g00966 K19600 - fve:101295095 751.51