LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr2g00957	ATGGGGAAGAACGAGTTTCTCACACCAAAGGCAATAGCTAATCGAATCAAAGCAAAGGGGCTGCAAAAGCTTAGGTGGTACTGCCAGATGTGTCAGAAACAATGTCGAGATGAGAATGGGTTCAAGTGTCATTGTATGAGTGAAAGTCACCAGCGTCAAATGCAAATCTTTGGACAAAACTCAAATCGGATAGTTGAGGGCTATTCTGAAGAGTTTGAGAACACCTTTCTTGAGCACATGAAGCGCAGCCACCGTTTCAGTCGTATAGCAGCTACAGTAGTTTACAATGAATACATTAGTGATAGACATCACATTCATATGAATTCCACTAAATGGCTTACACTAACTGAGTTTGTCAAATATTTGGGTCGGACTGGAAAGTGTAAGGTTGAAGAAACACCCAAGGGTTGGTTTATCACCTACATTGATAGAGATTCTGAGACTCTTTTCAAAGAGAGGATGAAGAATAAGAGAATAAAGTCCGACATGGCAGAAGAAGAGAAGCAAGAGAAGGAGATACAAAAACAAATAGAAAAGGCGGAGCAGTTGACGCAACCATCTTCCTCTGGATCTTATCAACCTTCACAGGCTGAACTTCCAAGAGAGTTAAAAGTGGAAGATGGAGTTAAGATTGGCTTTTCTCTTGGTTCATCTGCAAAACCTGTAACCAAGGAAAAAAGGGAGGGACCAAAGGTATTGTTCGATGAGGTTGAGGATGACAAAATGGAAGAAAGGAAACCTGGAGGCTCTTTGAAGAGGAAAGAAAGTGGCAGTGGAAAATCAACCTTGGACGAATTGATGCGAGAAGATGAGAGAAAAAGGGAGAAGATTAATAGAAAGGATTACTGGTTGCACGAGGGAATTGTTGTTAAGGTCACGAGCAAAGCTTTGGCAGATAAAGGGTATTACAAGCAAAAAGGTGTTGTGAGAAGGGTGATTGATAAATACGTTGGGGAAATAGAAATGCTTGAAAGCAAGCATGTGCTCAGAGTTGATCAGGCAGAGCTTGAAACTGTGATCCCCCAAGTTGGTGGTCTTGTTAAGATTGTCAATGGAGCTTATCGCGGATCTACAGCAAGATTGTTGGGGGTTGATACTGATCATTTTTGTGCCAAAGTGCAGATTGAGAGAGGTCCTTACGATGGCAGAGTCCTCAAGGCAGTGGAATACGAGGATCTTTGCAAATTGGCCCAGTGA	1197	0.4219	MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNSNRIVEGYSEEFENTFLEHMKRSHRFSRIAATVVYNEYISDRHHIHMNSTKWLTLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKERMKNKRIKSDMAEEEKQEKEIQKQIEKAEQLTQPSSSGSYQPSQAELPRELKVEDGVKIGFSLGSSAKPVTKEKREGPKVLFDEVEDDKMEERKPGGSLKRKESGSGKSTLDELMREDERKREKINRKDYWLHEGIVVKVTSKALADKGYYKQKGVVRRVIDKYVGEIEMLESKHVLRVDQAELETVIPQVGGLVKIVNGAYRGSTARLLGVDTDHFCAKVQIERGPYDGRVLKAVEYEDLCKLAQ	398

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr2g00957	398	MobiDBLite	consensus disorder prediction	179	196	-	-
	Accr2g00957	398	FunFam	DNA/RNA-binding protein KIN17, putative	61	160	-	-
	Accr2g00957	398	MobiDBLite	consensus disorder prediction	221	271	-	-
	Accr2g00957	398	FunFam	DNA/RNA-binding protein KIN17, putative	341	397	-	-
	Accr2g00957	398	CDD	KOW_KIN17	343	396	IPR041995	-
	Accr2g00957	398	SMART	Kin17_mid_2	52	178	IPR019447	-
	Accr2g00957	398	Pfam	Domain of Kin17 curved DNA-binding protein	52	177	IPR019447	-
	Accr2g00957	398	Gene3D	-	60	160	IPR038254	-
	Accr2g00957	398	MobiDBLite	consensus disorder prediction	160	200	-	-
	Accr2g00957	398	MobiDBLite	consensus disorder prediction	160	178	-	-
	Accr2g00957	398	Coils	Coil	260	280	-	-
	Accr2g00957	398	Coils	Coil	154	183	-	-
	Accr2g00957	398	PANTHER	KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG	1	397	IPR037321	-
	Accr2g00957	398	MobiDBLite	consensus disorder prediction	220	271	-	-
	Accr2g00957	398	FunFam	DNA/RNA-binding protein kin17-like	287	340	-	-
	Accr2g00957	398	Gene3D	-	341	397	IPR014722	-
	Accr2g00957	398	Pfam	KN17 SH3-like C-terminal domain	279	332	IPR041330	-
	Accr2g00957	398	SUPERFAMILY	beta-beta-alpha zinc fingers	26	59	IPR036236	-
	Accr2g00957	398	Gene3D	-	287	340	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr2g00957	Accr-Chr2	26582135	26583331	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr2g00957	1	397	C2H2 Transcription Factor Family	AT1G55460	71.359	0.0	593

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr2g00957	K13102		-	gmx:100785931	671.774