Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g00888 ATGTTGGCGAAGAGGAAGGCACTCGAAATCGAAGCATGCTTGACTTGCCCTCTTTGTTGTAAGTTGTTGGAGGATGCTACTACCACCACTCTTTGCCTCCATACCTTCTGCAGGAGGTGCATAAATGAGAAACTCTTGGATGAGAATTCAGGCCAGATTGCAATTTGCAGAATATTAGGGCCAATATATTCCCCATCAAGGTTGCTGGTCTACATTTATGCAATTTTTTTTGTTGAAGAACCCACAAGGCAAACCTTTGGCGGTGTTGGAGAGTTAAAGTCATCAGATTATATTTTGACACCCGAACCGAAGAAAAGGAACTCAACGAAGCTGAGGATGGAACCAAACCCGGCTTTTGCTGCCGCCCTGGCTATATCTGGCTCCGAGCAAAGGAGGACGTCGGCAAAACGGGCCGCACCGGAGTCCACATCGACAAGCGCTATGAAAACCAAACGGGCTAGTTCATCCCAGAAATCCAAGGTCCAACAAACAGCCCTACCTTCGAGATCAACAATAACTGCCCCGTCAATTGATGCTTCGCCGGAGAGTCCTGTCGACCCTCCTTCTACCAATCTTCCTCCGCCATATCCAAGTCCTAAATTCCCTTATGGTATTATCTGGGACGAAGGGGTGCCCCCTCAGATTAGTAGGGCGATCGGGCTTCCCAGATGCTTTTTTGAGCCCAAGGAGTACGATACTTCTAAACTTGAAGAGCTGTATGATATAGAACTTCACACTTTGCGGGGCGCTGGGTTAGCACGAGCCTTGGTGACATTGAACATGAAATATTCCAGGCAGGCCGATGAGCTCGACAAGGTCAAACTCGAATTTGCAGAACATGTTCACAAATCCGACAAGCTAACATCAACCATTAGGGAGTATGCCCAAGCAAAAGTGCGAGAAGCAGAAGTGGCGAGGAGCAAGATGGAAAGAGAGCTGAAGAAGGAAAAAGAAATCTCAAGGAAAGCTATTTTGGAGCTAAATCAACTACGACAAGAAAGCCTCTGGGATAAGAAAACTTTGGAACAATATCGGCAAGAGAGACAAGAACATCTTGCCGAGCTTAATACTCATATTGCCGCTGTGAGATCTGCCCAAGAGTTGATCAAGATAAAGGATGATGCCATAAAAGAGTCTGTGGCTGAATCCTTTGGCAATGCCATAGCACAAATTAAGCTCTTGAACCCTAACATTTCTTTCAACACGTCCAGGATGGATTGCATGTCGTGGGTTAGACACGGCAAGATAGTCCCTCTCTTTCCTCCTTCCGATGATGTCCCCGATGCTCATCTAGAGGAAGACGAAGATGAGGATTTAGGCGAGGAAACAGATGAAGACGAAGATGAGGATGTAGGCAAGGAAACAGATGAAGACGAAGATGAGGATGTAGGCGAGGAAACAGATGCTTCCCCCTGA 1416 0.4682 MLAKRKALEIEACLTCPLCCKLLEDATTTTLCLHTFCRRCINEKLLDENSGQIAICRILGPIYSPSRLLVYIYAIFFVEEPTRQTFGGVGELKSSDYILTPEPKKRNSTKLRMEPNPAFAAALAISGSEQRRTSAKRAAPESTSTSAMKTKRASSSQKSKVQQTALPSRSTITAPSIDASPESPVDPPSTNLPPPYPSPKFPYGIIWDEGVPPQISRAIGLPRCFFEPKEYDTSKLEELYDIELHTLRGAGLARALVTLNMKYSRQADELDKVKLEFAEHVHKSDKLTSTIREYAQAKVREAEVARSKMERELKKEKEISRKAILELNQLRQESLWDKKTLEQYRQERQEHLAELNTHIAAVRSAQELIKIKDDAIKESVAESFGNAIAQIKLLNPNISFNTSRMDCMSWVRHGKIVPLFPPSDDVPDAHLEEDEDEDLGEETDEDEDEDVGKETDEDEDEDVGEETDASP 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g00888 471 SUPERFAMILY RING/U-box 10 49 - -
Accr2g00888 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 67 IPR013083 -
Accr2g00888 471 Coils Coil 341 361 - -
Accr2g00888 471 MobiDBLite consensus disorder prediction 428 471 - -
Accr2g00888 471 Coils Coil 292 333 - -
Accr2g00888 471 ProSitePatterns Zinc finger RING-type signature. 32 41 IPR017907 -
Accr2g00888 471 ProSiteProfiles Zinc finger RING-type profile. 16 57 IPR001841 -
Accr2g00888 471 Pfam Zinc finger, C3HC4 type (RING finger) 16 49 - -
Accr2g00888 471 MobiDBLite consensus disorder prediction 421 471 - -
Accr2g00888 471 MobiDBLite consensus disorder prediction 127 178 - -
Accr2g00888 471 MobiDBLite consensus disorder prediction 126 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g00888 Accr-Chr2 24113720 24117085 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g00888 1 135 C3H Transcription Factor Family AT2G30580 37.143 9.26e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g00888 K16277 - dcr:108206797 80.1073