Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g00842 ATGGCGGGAGCTACAGGTAGAGCCCTTATCACTCTTTCGCTAAACTCCAACCTGTCTACGTTCGCACGCTTATCTCATGGCCGCGCCATTCCATTTCTCAAACTATCTGCAAGACCCAGTAGGGTTTTGCTAGGGTTTAGACCCCTCTGCTCCCTCACCTCCACCGCCACGGCCACTGTTTCTGATACAACGGAGTCCATTGATCCTGACCAAATCAAGCACTCTATTCTTCTTGAGAGACTCAGATTCAGGCACCTCAAAGACTCCTCTAAAACTCAAGAAATCAAGAAGTCAGCGAAATCAGTTGCTATCCCTGAGAGGGTTCGTGAGAATGAGGGGAAGAAGTCAGAGAAGAAGAAATTGGTGGGAAGTTTTGAGGAGTTGGGCCTCACCGATGAGGTAATGGGAGCCGTGAGGGAGATGAATATTGAGGTTCCGACTGAGATTCAGTGTATCGGCATCCCTGCTGTATTGGAAGGGAAGGGTGTTGTTTTGGGATCTCATACTGGTTCGGGCAAGACTCTTGCCTACATGCTTCCCCTTGTTCAGTTGCTTAGACAGGATGAACAATTGAATGGATTACTTTTGAAGCCCAGGCGTCCCCGGGCTGTTGTGCTATGCCCTACGAGGGAGTTGTCTGAGCAGGTATTTCGAGTTGCAAAATCTATTAGCCATCATGCAAGGTTAAGGTCTACAATGGTAAGTGGGGGTGGCCGTCTCAGGCCTCAGGAGGATTCCTTAAATAACCCCATTGACTTGGTTGTTGGTACCCCGGGCAGAATTCTGCAGCACATTGAGGAAGGCAACATGGTATATGGTGACATCAAATACTTGGTATTGGATGAGGCAGACACAATGTTTGATCGAGGTTTTGGTCCTGATATACGCAAGTTTATTGGCCCACTAAAGCATCGTGCATTAAAACCTAATGGCCTAGGTTTTCAGACTATCTTGGTTACTGCAACCATGACAAAGGCAGTGCAAAATCTGGTTGACGAGGAGTTTCAAGGCATTGTGCATCTACGAACGTCAACACTACATAAAAAGATTGCTTCCGCTCGTCATGATTTTATTAAGCTGTCAGGTTCTGAAAACAAGCTGGAGGCATTGCTACAGGTTCTGGAGCCAAGCCTGGCAAAAGGGAATAGAGTGATGGTTTTCTGCAATACATTGAACTCTAGCCGTGCAGTGGATCATTTTCTCAGTGAAAATCAGATATCTACCGTCAATTACCATGGAGAGGTACCAGCAGAGCAAAGGGTTGAAAACCTCCAGAAGTTTAAAAGTGATGAACATGATTGTCCTACATTAGTTTGCACAGACTTGGCTGCCAGGGGTCTAGATTTGGATGTCGATCATGTTATCATGTTTGATTTTCCTTTGAACTCTATTGACTACCTCCACCGTACCGGTAGAACAGCTCGTATGGGTGCAAAAGGGAAAGTAACTAGCTTGGTTGCAAAAAAAGATACATCCTTGGCCACTCGAATAGAAGAAGCAATAAGGAAGAATGAGAGCTTGGAGGCTATCAGTAAAGAAAGTCTTCGGAGGGAGATTCCAAGGACCCAAATAACTCAGCAGAAGGGAAGGAATAACAAATTGGTAAAGGTTTCCAAAGCAAAAAACACTTCTACTGTCCGTGCCACTTCCAGAAAAGCATCGAAACCATTAAAATCAGCAGAAGCATCAAAAAGTTCTACCAGTGTTAACTCTGGTTCTAGAAAAGCATCCAAACCATTAAAATCAGCGAAGGCAGGAGGGATTCAGGTTAAAAAATCTGTAAGATCTTCCGGTGCAACCAGCCCGAAGAAAGCTTCAGCGGGGAAGAAGCTGACAAGTAGAAGAGATAGTGCTAGCAAATCAGCGAATTCTAAACTGAGTGTTGTTGGTTTTAGGGGTAGGAGTTCCTCAAACAAGAAGGAATCACAATTTTGA 1935 0.4512 MAGATGRALITLSLNSNLSTFARLSHGRAIPFLKLSARPSRVLLGFRPLCSLTSTATATVSDTTESIDPDQIKHSILLERLRFRHLKDSSKTQEIKKSAKSVAIPERVRENEGKKSEKKKLVGSFEELGLTDEVMGAVREMNIEVPTEIQCIGIPAVLEGKGVVLGSHTGSGKTLAYMLPLVQLLRQDEQLNGLLLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARLRSTMVSGGGRLRPQEDSLNNPIDLVVGTPGRILQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFIGPLKHRALKPNGLGFQTILVTATMTKAVQNLVDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQISTVNYHGEVPAEQRVENLQKFKSDEHDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDTSLATRIEEAIRKNESLEAISKESLRREIPRTQITQQKGRNNKLVKVSKAKNTSTVRATSRKASKPLKSAEASKSSTSVNSGSRKASKPLKSAKAGGIQVKKSVRSSGATSPKKASAGKKLTSRRDSASKSANSKLSVVGFRGRSSSNKKESQF 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g00842 644 CDD DEADc 134 333 - -
Accr2g00842 644 MobiDBLite consensus disorder prediction 617 644 - -
Accr2g00842 644 MobiDBLite consensus disorder prediction 559 577 - -
Accr2g00842 644 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 366 516 IPR001650 -
Accr2g00842 644 Pfam DEAD/DEAH box helicase 147 330 IPR011545 GO:0003676|GO:0005524
Accr2g00842 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 488 IPR027417 -
Accr2g00842 644 Gene3D - 351 589 IPR027417 -
Accr2g00842 644 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 341 IPR014001 -
Accr2g00842 644 SMART ultradead3 142 361 IPR014001 -
Accr2g00842 644 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 65 512 - -
Accr2g00842 644 Gene3D - 84 342 IPR027417 -
Accr2g00842 644 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 123 151 IPR014014 GO:0003724
Accr2g00842 644 MobiDBLite consensus disorder prediction 92 116 - -
Accr2g00842 644 Pfam Helicase conserved C-terminal domain 366 477 IPR001650 -
Accr2g00842 644 Coils Coil 497 517 - -
Accr2g00842 644 SMART helicmild6 395 477 IPR001650 -
Accr2g00842 644 CDD SF2_C_DEAD 354 486 - -
Accr2g00842 644 MobiDBLite consensus disorder prediction 520 552 - -
Accr2g00842 644 MobiDBLite consensus disorder prediction 519 644 - -
Accr2g00842 644 MobiDBLite consensus disorder prediction 593 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g00842 Accr-Chr2 22196031 22200666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g00842 122 499 Eukaryotic Initiation Factors Gene Family AT3G19760 28.460 3.55e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g00842 - - pcin:129297913 1059.28