Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g00808 ATGGCCACCTCCCAGCATCGCTGCGTTTTTGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGGCCTGTAGTATCATTCAGATTAGTCATTGACAGAGAAACTGGAAAACCAAAAGGATATGGGTTCTGCGAGTATAAGGATGAAGAGACAGCTCTAAGTGCCCGTCGTAACCTTCAGGGTTATGAGATTAATGGGCGGCAGTTGCGTGTTGATTTTGCTGAAAATGACAAAGGTGCTGACAGAAATAGAGAACAGGGTCGTGGTGGGCCTGGATTTGCAGCAAATGTTGACCCTCAGAAACAAGTAGCTGGATCAGTTGTCCCTGGGGACCATCAACCTATTGGTCTCCATATTGCCATAACAGCTGCAACTGTCATGGAAGCAGCTCTAGGAGGGCCTCAATCTGGCATCCAGTCAAATCAAAATGGTTTGCGGGTTCAGTCAGGATTGACACATGACCCTTTAACTCTGCATTTGGCCAAACTATCCCGGAATCAGCTGACTGAGATTGTCTCTGAGCTTAAGGCAATGGCTACATGTAACAAAGAATCAGCTCGTCAGCTGTTACTTTCTAGACCGCAGTTGCCTAAGGCCCTTTTTCAGGCACAGATAATGCTAGGAATGGTAACCCCACAAGTGTTACAAATGCCAAACCTTAGGCAAGTTGCAGGTGAAACCTTGCAGCCTCCAGTGGATGAAAGCCAGCTAGGTCAGTCGGCAGTTCTTCAATTATCTGGGCTGCCTTCTCATGTGCCGACCAAGTTGCAGTCTGGCTTAATGCCCAATATTCAAGAAACTCAAGCCGGTGCCTTACATCATAATTCTTTTGTCCCCAATCAATTAGTTGCACACCCAAAGCCTCCTTTGCAGCCTCGAATGCAGCTTCCACAACACCCAGGCAACCCAGTGGTACAGCTGGGCACATTGCCAGGGCATTCTAGTTCATCAATTCCTTCGTTGCGTCCCCAGTCTTCATTTAGTTTGCCTGTTAGACCAACAAATCAGCCTGGTTTGTCTGTTGGACCACCAATTCAGCTGACAAATTCAACTTCTCTGACTCAGCAAATGCATTTGCCACAACACTCAGGCATTGGTAACTCGAGTGTAGGGCAAAATATTCGGATGATTCGACCGGATGCAGGCTTTCAGCCTGGCCCGTCCATATCATCAAGTATTCCTCTGTCAATTGGCAGGGAAGCTGATAGATCAGCTAAAGTTATTGAAGATTCTAATTGGGCCAAGAAAAGTAGTACACATTCAAACATTGCTCTTGGATCAGGAGAGAAAACAAATGAACGTGCTTCTAAGCAGATTAAATTAGATGATGGAAGGAACGCACCTTTCTCTGCAGGAGTCACAAATATGCCTGTTTCCAAGGGAACTTCCCATGTCCTTGGAAGTGTGTTATTTCCTGTAAATGCAACTTCAAAGTCGGAAGTGCGATACCCTGAGCAACAATCCTCTCAGCCTCAGCTTCCGCCTGACGTGGAATCGGTTTTACTGCAACAAGTGTTGAGTCTAACCCCTGAGCAATTGAGTTCCCTGCCACCAGAGCAGCAACAGCAGGTTTTACAGCTTCAGCAGGCTCTCCGGCGAGACCAGACTCAGCCCTCATAA 1647 0.4699 MATSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGFAANVDPQKQVAGSVVPGDHQPIGLHIAITAATVMEAALGGPQSGIQSNQNGLRVQSGLTHDPLTLHLAKLSRNQLTEIVSELKAMATCNKESARQLLLSRPQLPKALFQAQIMLGMVTPQVLQMPNLRQVAGETLQPPVDESQLGQSAVLQLSGLPSHVPTKLQSGLMPNIQETQAGALHHNSFVPNQLVAHPKPPLQPRMQLPQHPGNPVVQLGTLPGHSSSSIPSLRPQSSFSLPVRPTNQPGLSVGPPIQLTNSTSLTQQMHLPQHSGIGNSSVGQNIRMIRPDAGFQPGPSISSSIPLSIGREADRSAKVIEDSNWAKKSSTHSNIALGSGEKTNERASKQIKLDDGRNAPFSAGVTNMPVSKGTSHVLGSVLFPVNATSKSEVRYPEQQSSQPQLPPDVESVLLQQVLSLTPEQLSSLPPEQQQQVLQLQQALRRDQTQPS 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g00808 548 MobiDBLite consensus disorder prediction 521 548 - -
Accr2g00808 548 Pfam Transcription termination and cleavage factor C-terminal 510 542 IPR026896 GO:0031124
Accr2g00808 548 MobiDBLite consensus disorder prediction 421 441 - -
Accr2g00808 548 MobiDBLite consensus disorder prediction 290 341 - -
Accr2g00808 548 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
Accr2g00808 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Accr2g00808 548 SMART rrm1_1 8 81 IPR000504 GO:0003723
Accr2g00808 548 MobiDBLite consensus disorder prediction 317 341 - -
Accr2g00808 548 MobiDBLite consensus disorder prediction 84 108 - -
Accr2g00808 548 FunFam Cleavage stimulating factor 64 152 227 - -
Accr2g00808 548 MobiDBLite consensus disorder prediction 421 467 - -
Accr2g00808 548 Gene3D - 504 547 IPR038192 -
Accr2g00808 548 Gene3D - 1 114 IPR012677 -
Accr2g00808 548 FunFam Cleavage stimulating factor 64 1 116 - -
Accr2g00808 548 FunFam Related to Cleavage stimulation factor 501 543 - -
Accr2g00808 548 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 544 - -
Accr2g00808 548 Gene3D - 151 227 - -
Accr2g00808 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Accr2g00808 548 CDD RRM_CSTF2_RNA15_like 7 83 - -
Accr2g00808 548 Pfam Hinge domain of cleavage stimulation factor subunit 2 161 225 IPR025742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g00808 Accr-Chr2 20186126 20193153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g00808 9 82 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.40e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g00808 K14407 - gmx:100794399 619.002