Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g00727 ATGGCTTCTTTTGCCTTTGATGGAGACTGGCATGATGCTCATGCAACCTTCTACGGGGACATGTCCGGAGGCGAAACCATGCAAGGAGCTTGTGCTTATGGAGACCTATTCAAGCAAGGTTATGGCTTGGAAACGGCAGCTCTAAGCACAGCTCTCTTCAACAATGGTGCTACCTGCGGGGCCTGCTTCGAGCTCGAGTGCATCAATGACCCGCAGTGGTGCATCCCCGGTGCCGGCACCATCAAGATCACGGCCACCAACTTCTGTCCACCCAACTACGATCCTCCTATCGAGTACCGCTGGTGCAACCCTCCCAGGGAACACTTTGACCTCTCCATGGCCATGTTCACCAAGATCGCCAACTACAAAGCCGGCATCGTCCCCATCCACTACCGCCGTGTCCCGTGCTCCAAGTCCGGTGGCGTCAAGTTCGAGCTCAAGGGCAACCCTTATTGGATAACTACAGTTTTTTTCAATGTGGCCAACGCCGGTGACATCACTGACGCCAAGATCAGAGGCGGTAATGGCGGCGATTGGATTCAGATGACAAGGAATTGGGGTCAGCTGTGGCAGACCGGGACGAACCTAGTGGGACAAAGCTTGTCATACATGTTAACTTCCAGTGATGGGAAGACTTTGGAGTTTGATAATGTTGCACCTTCTAATTGGCAGTTTGGTCAGACTTATGAGGCAAATTATAACTTCTAA 708 0.5212 MASFAFDGDWHDAHATFYGDMSGGETMQGACAYGDLFKQGYGLETAALSTALFNNGATCGACFELECINDPQWCIPGAGTIKITATNFCPPNYDPPIEYRWCNPPREHFDLSMAMFTKIANYKAGIVPIHYRRVPCSKSGGVKFELKGNPYWITTVFFNVANAGDITDAKIRGGNGGDWIQMTRNWGQLWQTGTNLVGQSLSYMLTSSDGKTLEFDNVAPSNWQFGQTYEANYNF 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g00727 235 SMART dpbb_1 45 131 IPR007112 -
Accr2g00727 235 Gene3D - 2 137 IPR036908 -
Accr2g00727 235 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 151 231 IPR007117 -
Accr2g00727 235 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 28 141 IPR007112 -
Accr2g00727 235 Pfam Expansin C-terminal domain 142 220 IPR007117 -
Accr2g00727 235 CDD DPBB_EXPA_N 9 136 - -
Accr2g00727 235 Gene3D - 140 235 IPR036749 -
Accr2g00727 235 PRINTS Expansin/Lol pI family signature 179 193 IPR007118 GO:0005576
Accr2g00727 235 PRINTS Expansin/Lol pI family signature 9 24 IPR007118 GO:0005576
Accr2g00727 235 PRINTS Expansin/Lol pI family signature 124 140 IPR007118 GO:0005576
Accr2g00727 235 PRINTS Expansin/Lol pI family signature 27 45 IPR007118 GO:0005576
Accr2g00727 235 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Accr2g00727 235 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576
Accr2g00727 235 Pfam Lytic transglycolase 45 131 IPR009009 -
Accr2g00727 235 PRINTS Expansin signature 188 209 IPR002963 GO:0009664
Accr2g00727 235 PRINTS Expansin signature 217 233 IPR002963 GO:0009664
Accr2g00727 235 PRINTS Expansin signature 81 91 IPR002963 GO:0009664
Accr2g00727 235 PRINTS Expansin signature 140 152 IPR002963 GO:0009664
Accr2g00727 235 PRINTS Expansin signature 67 78 IPR002963 GO:0009664
Accr2g00727 235 PRINTS Expansin signature 152 173 IPR002963 GO:0009664
Accr2g00727 235 PRINTS Expansin signature 99 116 IPR002963 GO:0009664
Accr2g00727 235 PRINTS Expansin signature 116 129 IPR002963 GO:0009664
Accr2g00727 235 PRINTS Expansin signature 40 54 IPR002963 GO:0009664
Accr2g00727 235 SUPERFAMILY Barwin-like endoglucanases 9 159 IPR036908 -
Accr2g00727 235 SUPERFAMILY PHL pollen allergen 138 230 IPR036749 -
Accr2g00727 235 PANTHER EXPANSIN-A15 8 231 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g00727 Accr-Chr2 17501234 17502720 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g00727 6 235 Expansin Gene Family AT5G39300 62.609 8.28e-109 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g00727 - - rcn:112189457 382.104