Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g00683 ATGGAGTCTGTGGTGGCAACAGTGAGTGGCTACCATGGAACAGAGCGATTCAACCTTATCAAGTTGATTTCACATTCTGGTGCAAATTATGTTGGCGCAATGTCACGATCAATCACACACCTGATTTGTTGGCGATTTGATGGAAAGAAATATAACCTTGCTCAGAAGTTCAGAACAGTTATAGTAAATCACCAGTGGATTGAAGACTGTTTAAAGCAAGGAAGGCGTGTTCCAGAGGAACCTTATAGATTGAAAAGTGGAGAAGAGGTGGGGCCAACATTGCTGCAAGTTCCACTTATTGTCCAGGAGGAGCCAATAACTTTTTCTTCCAGACGATCAAGGACAGAAAAAAGAAAGATCTCCTATAGTAATAGAGTGGCTACTTCTGCTGGTCCTTCTCGTCACAGAAGAAGGCTTGTAAAAAGGAATGTTCAAGAAGTTTCAGCTCCTTTACTTGATTTAAACTCTGGGTACCTTAGCAGAATGGATAGATTAAATATGGATGCTGTAGCTTCTTCTAGCCTTTCTGGTTGTGTCTCTAGTGATACTATCTTAGAAAATAGAGAAGGATCAGATATTGACTCATATAACCAAAACATAGCTGTCAATACAGCATCAAATGCCACTCGACAAATCAAAGATTCAAATAATTTATCAAGTTCAAGAATTTCAGCTCTATGCGTACAAGATGCCTTGCCTACTGCAGAACAAATATCTATAGACGAGTGTTATGAAAAGTCCGCAGATAGTATCCTGGATGGTCATGCGGCTGACTTACCTACGTCGACAGAGTTGTCATGTGTCATATGTTTGACAGAATTCAGCTCAACGCGGGGGGTTTTGCCATGTGGACATAGGTTTTGTTATTCTTGTATCCAGAGATGGGTTGATCACAGGACTACAATGGGAAAAGTCTCAACTTGTCCCTTGTGCAAGTCAAGGTTTGACAACATCATTAAATATGAGGATATGGCTGTGGATCAAAAGATATATTCCCAAACAATCCCATGTGGCATTCCGATCTCAGATATCAATTTACTTATGCATCGGGAACAACCAAATTATGGTTTTGAGGCAGGTGCTTGTGTTGTTTGCCGGGGACGAGAACCTGAGGATTTGCTCATGAGTTGCCATCTTTGCCATATTCGACAAATCCATTCCTATTGCCTGGACCCTCCTTTATTGCCCTGGACATGCGATCACTGTAAGGATCTTCGGATGCTTTATCATAATCATTCACATTAG 1245 0.4112 MESVVATVSGYHGTERFNLIKLISHSGANYVGAMSRSITHLICWRFDGKKYNLAQKFRTVIVNHQWIEDCLKQGRRVPEEPYRLKSGEEVGPTLLQVPLIVQEEPITFSSRRSRTEKRKISYSNRVATSAGPSRHRRRLVKRNVQEVSAPLLDLNSGYLSRMDRLNMDAVASSSLSGCVSSDTILENREGSDIDSYNQNIAVNTASNATRQIKDSNNLSSSRISALCVQDALPTAEQISIDECYEKSADSILDGHAADLPTSTELSCVICLTEFSSTRGVLPCGHRFCYSCIQRWVDHRTTMGKVSTCPLCKSRFDNIIKYEDMAVDQKIYSQTIPCGIPISDINLLMHREQPNYGFEAGACVVCRGREPEDLLMSCHLCHIRQIHSYCLDPPLLPWTCDHCKDLRMLYHNHSH 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g00683 414 ProSiteProfiles Zinc finger RING-type profile. 267 312 IPR001841 -
Accr2g00683 414 SMART ring_2 267 311 IPR001841 -
Accr2g00683 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 331 IPR013083 -
Accr2g00683 414 Pfam Ring finger domain 266 312 IPR001841 -
Accr2g00683 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 413 IPR013083 -
Accr2g00683 414 ProSitePatterns Zinc finger RING-type signature. 283 292 IPR017907 -
Accr2g00683 414 SMART BRCT_7 1 74 IPR001357 -
Accr2g00683 414 Gene3D BRCT domain 1 89 IPR036420 -
Accr2g00683 414 ProSiteProfiles BRCT domain profile. 1 84 IPR001357 -
Accr2g00683 414 SUPERFAMILY RING/U-box 260 319 - -
Accr2g00683 414 SUPERFAMILY FYVE/PHD zinc finger 358 404 IPR011011 -
Accr2g00683 414 SUPERFAMILY BRCT domain 1 85 IPR036420 -
Accr2g00683 414 PANTHER F5A8.9 PROTEIN 104 411 - -
Accr2g00683 414 Pfam twin BRCT domain 4 66 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g00683 Accr-Chr2 15721226 15725362 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g00683 38 90 Core DNA Replication Machinery Family AT4G02110 48.148 7.31e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g00683 - - pcin:129291305 632.869