Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g00682 ATGGAAGAGGAAGAAGATCAGCTTCAACAGCGACCTCGAGAATCCATATCATTGCCAATTCAAGGTATGGAGTCTGTGGTGGCAACAGTGAGTGGCTACCATGGAACAGAGCGATTCAACCTTATCAAGTTGATTTCACATTCTGGTGCAAATTATGTTGGCGCAATGTCACGATCAATCACACACCTGATTTGTTGGCGATTTGATGGAAAGAAATATAACCTTGCTCAGAAGTTCAGAACAGTTATAGTAAATCACCAGTGGATTGAAGACTGTTTAAAGCAAGGAAGGCGTGTTCCAGAGGAACCTTATAGATTGAAAAGTGGAGAAGAGGTGGGGCCAACATTGCTGCAAGTTCCACTTATTGTCCAGGAGGAGCCAATAACTTTTTCTTCCAGACGATCAAGGACAGAAAAAAGAAAGATCTCCTATAGTAATAGAGTGGCTACTTCTGCTGGTCCTTCTCGTCACAGAAGAAGGCTTGTAAAAAGGAATGTTCAAGAAGTTTCAGCTCCTTTACTTGATTTAAACTCTGGGTACCTTAGCAGAATGGATAGATTAAATATGGATGCTGTAGCTTCTTCTAGCCTTTCTGGTTGTGTCTCTAGTGATACTATCTTAGAAAATAGAGAAGGATCAGATATTGACTCATATAACCAAAACATAGCTGTCAATACAGCATCAAATGCCACTCGACAAATCAAAGATTCAAATAATTTATCAAGTTCAAGAATTTCAGCTCTATGCGTACAAGATGCCTTGCCTACTGCAGAACAAATATCTATAGACGAGTGTTATGAAAAGTCCGCAGATAGTATCCTGGATGGTCATGCGGCTGACTTACCTACGTCGACAGAGTTGTCATGTGTCATATGTTTGACAGAATTCAGCTCAACGCGGGGGGTTTTGCCATGTGGACATAGGTTTTGTTATTCTTGTATCCAGAGATGGGTTGATCACAGGACTACAATGGGAAAAGTCTCAACTTGTCCCTTGTGCAAGTCAAGGTTTGACAACATCATTAAATATGAGGATATGGCTGTGGATCAAAAGATATATTCCCAAACAATCCCATGTGGCATTCCGATCTCAGATATCAATTTACTTATGCATCGGGAACAACCAAATTATGGTTTTGAGGCAGGTGCTTGTGTTGTTTGCCGGGGACGAGAACCTGAGGATTTGCTCATGAGTTGCCATCTTTGCCATATTCGACAAATCCATTCCTATTGCCTGGACCCTCCTTTATTGCCCTGGACATGCGATCACTGTAAGGATCTTCGGATGCTTTATCATAATCATTCACATTAG 1311 0.4127 MEEEEDQLQQRPRESISLPIQGMESVVATVSGYHGTERFNLIKLISHSGANYVGAMSRSITHLICWRFDGKKYNLAQKFRTVIVNHQWIEDCLKQGRRVPEEPYRLKSGEEVGPTLLQVPLIVQEEPITFSSRRSRTEKRKISYSNRVATSAGPSRHRRRLVKRNVQEVSAPLLDLNSGYLSRMDRLNMDAVASSSLSGCVSSDTILENREGSDIDSYNQNIAVNTASNATRQIKDSNNLSSSRISALCVQDALPTAEQISIDECYEKSADSILDGHAADLPTSTELSCVICLTEFSSTRGVLPCGHRFCYSCIQRWVDHRTTMGKVSTCPLCKSRFDNIIKYEDMAVDQKIYSQTIPCGIPISDINLLMHREQPNYGFEAGACVVCRGREPEDLLMSCHLCHIRQIHSYCLDPPLLPWTCDHCKDLRMLYHNHSH 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g00682 436 SMART BRCT_7 17 96 IPR001357 -
Accr2g00682 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 435 IPR013083 -
Accr2g00682 436 ProSiteProfiles Zinc finger RING-type profile. 289 334 IPR001841 -
Accr2g00682 436 ProSitePatterns Zinc finger RING-type signature. 305 314 IPR017907 -
Accr2g00682 436 SUPERFAMILY BRCT domain 20 107 IPR036420 -
Accr2g00682 436 ProSiteProfiles BRCT domain profile. 15 106 IPR001357 -
Accr2g00682 436 PANTHER F5A8.9 PROTEIN 126 433 - -
Accr2g00682 436 Gene3D BRCT domain 20 111 IPR036420 -
Accr2g00682 436 SUPERFAMILY FYVE/PHD zinc finger 380 426 IPR011011 -
Accr2g00682 436 Pfam Ring finger domain 288 334 IPR001841 -
Accr2g00682 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 353 IPR013083 -
Accr2g00682 436 Pfam twin BRCT domain 26 88 IPR001357 -
Accr2g00682 436 SUPERFAMILY RING/U-box 282 341 - -
Accr2g00682 436 SMART ring_2 289 333 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g00682 Accr-Chr2 15720742 15725362 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g00682 60 112 Core DNA Replication Machinery Family AT4G02110 48.148 7.47e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g00682 - - pcin:129291305 660.603