Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g00588 ATGCCCAAATCTCAAACCCTAAGTTCCGTTGAGCTCTTCCACAGTGCTCTCCAATCCCTAAACTCGTCGCCTCCCTCTCCGTCAGTTTCTTTCCAGCCGCATCACTTGCCTCTTCCGCCGTCTTTCCCCCAATCTAAAATCATCCCTAAAACCCGCTTCGTGGTGGATGCATTCCGCCATGCCGGCGATTACTCTGTTGCCTACTTTCTTTCCCATTTCCACTCTGATCACTACACTGGTCTTGGCTCTAATTGGTGTAAAGGTATTGTCTTTTGCTCCTACACGACTGCTCGACTTGTCGTTGAAGTGCTCGGGGTTCCTTCGAAGTTCGTAGTCCCTTTACGGCTCTGTGAGCCGGTTGAGATTGATGGCTGTGAAGTTACTCTTATTGATGCGAATCATTGCCTTGGGGCTGTGCAATTCTTGTTCAAAATTCCAGGTGTTGATGGAAAGTGCGAGAGGTATGTTCATACGGGAGATTTTCGGTTTTCTAAGGCAATGAGGTCAGAGCCTCTACTTGCTGCGTATGTTGGTGCGGATGCTGTATTTTTGGACACAACCTATTGCCACCCAAAGTTTCAGTTTCCTAGCCAAGAGGAGTCTGTAGCTTATATAGTTGATGTAGTAGGGAGGGTTGAAAGTGAAAATGATTGTTCTACTAGAAATGTTTTGTTCCTAGTTGCTACTTATGTTGTTGGGAAAGAGAAGATTCTTCTTGAACTTGCTCGTAGGTTTAAACGTAAAGTGCATGTGGATGCAAGAAAAATGGAGGTTTTGCGGGTTCTTGGGTATGGGGAAGGCGGCGAGTTTACAGATGATAGCACTCAAACTAATATTCATGTTGTTGGGTGGAATGTGTTGGGTGAGACATGGCCATACTTTAGGCCTAATTTTGTTAGAATGAAGGAGATTATGACTGAGAGAGGGTACTCTGAAGTTGTGGGTTTTGTTCCAACTGGATGGACTTATGAAGTGAAGCGCAATAAGTTTACTGTGAAGTCAAAGGATTCATTTCAGATTCATCTTGTACCATATAGTGAGCATTCTAACTATGATGAGCTCAGGGAATATGTAAAGTTTTTGAAACCAAAGCGTGTTGTTCCTACCGTAGGTGTAGATGTTGACAAAACTGACAGTAGACATGTGGAAAAAATGATGAAGCATTTTGCTGGATTAGTTGATGAGACAGCCAACAAGCAGGACTTTCTAAAGGGATTTCATTGTACATCTAGTGAAGGGGGCTTCAAGTTTGACAAGGTTGATGATGATTCCACAAAGCCAGGGCAGAACATGGAGACAGAAGTGAAGTTATTTGACAAGGGAGATGATAAGAACATTAATCCAGATATTGTTCTAAATTTGTCTTCTACTCTTGAGGAAACTGGCTTGCAGGACCCCACATCACTAAAGGGTGAGGAAACAGAGAAAATCAGTCAAGAGATGTCCAGTTATTTGCCTGCATGGGTGACTGAAGGACAAGTTCTAGAGCTGATCAGCAATGCAAGCGGCAATGTTGTTGAGGCTGTTTCTAATTTCTATGAACGTGAAACTGAATTTCACAATCAAGTATTTTCCTGTCAAACCTCTGTTTCTGCATCCACATGCTTGTCAAATGACAGTGATTTGCTTTCAAAACCACCTGCTGTTAGTAGGAAAACTTGCATGGGTGTTGACATTTCACCAAGTCAAAACTTTAAGCTATCCACCCCGAGAAATTCAGTAGCAAGTAGCATTTCTCCTGCTAAAAGGAAGAGAAATAGTGTAAGAAAGCTTAACAAGAAAGTAAAAGTCCATACAAAATCAGAATCAAGTGGGTCAAAACAGTCCATGATAACAAAATTCTTCACTAAAGCCATGCCTGACATCACCCAATCTGGTAATTTTGAAGCTAGTACTGATGAAATCCCTGAAGTTGAAGACTTGCCCCAGTTAGACGTTGAAAAGGCATACAAGGATGAGATCAACCAGTTCATGCAGATAATAAATGGCAACGAATCATTAAAAAATTATGCTATCACAATAATTGAGAAGACAAAAGGAGATGTAAATAAGGCATTGGATATATATTACTGTAATCCTGGCAATTTTGATGAGAATGAAAAATCAGTTCAAGTTGAGTGCAAAGTGGACCACTCTTCAGAAAAGAAATGCGTGTCACAGGAATTGAGATCTACACCTGATATTTCTTTGCAAAGCATATCAAGAGAGAACCCCGATGTAACTCTTGTATCTCTACCACCTAAAGAATACAATCCTAAAGAACATGCATGTTGGAGAGATGGAGAGTCTGCTCCATATTTACATCTTGTACGAACCTTTAACCTTCTTGAGGATGAGAAAGGGAAGATAAAGGCTACTTCAATGTTATGCAATATGTTCAGAAGTTTGTTGGCCTTGTCTCCTGCTGATGTACTTCCTGCTGTATATCTATGCACAAACAGAATTGCTGCAGTCCATGAAAATAAGGAACTAAATATTGGCGGAAGTCTGATTACTGCTGCACTGGAAGAGGCATGTGGAACTACTCGATTGAAAATAAAGGAGATGTATAACAAATTTGGAGACCTTGGTGATGTTGCCCAAGAGTGTCGACAAACACAGAGATTGCTTGCTCCTCCAACACCACTTCTGATAAAAGATGTTTTCTTCGCACTCCACAAGATAAGCTTACAAACAGGCAATGGAAGCACTCTTAGGAAGAAAAGCATAATTGTAAATCTCATGTGTTCTTGTCGGGAGAAGGAGATAAAGTTTCTTGTTCGTACTTTGGCCAGGAACTTACGGACTGGTGCAATGATTAGAACTGTTTTGCCTGCTCTGGCTCAAGCTGTCCTAATGAATTCATGCCCTGCTTTACTCCAAGATGGAACTGCAGAAAATTTGAAGGAGAAGCTTCAGGGCCTTTCGGCAGAAATCATGGAAGCATATAACATACTCCCAAATCTGGATCTTCTAATACCATCCCTAATGAACAAAGGCACTAATTTTTGTGCTTCAAGTTTGTCAATGGTTCCACGAATACCTATCAAGCCTATGCTTGCAAAGATCACCAATGGCATTCCCCAAGTGCTGAAGTTATTTCAAAATAAAGCATTTACTTGTGAATATAAATATGATGGCCAGCGGGCCCAGATTCACAAATTAAGTGATGGGTCTATTCGTGTTTTCTCAAGAAATGGAGATGAAACAACATCAAGATTTCCTGATTTGATTGACATAATTAAGGAATTCTGCAAGCCTGCTTCAGTGACTTTTATACTGGATGCAGAGGTTGTAGGTATTGATAGGAAGAATGGATATAGGTATATGGCATTCCAAGAGTTATCTTCACGTGGGAGAGGAAGTAAAGATGCCTCAGTTACTACAGATAGCATAAAGGTGGACATTTGCCTGTTTGTCTTTGATATCATGTTTGCTAATGGACAGCAGCTTTTGGGTTTACCTCTCCGTGAAAGGCGAAAACATCTGAAGGATTTGTTCCATGATGAGAAACTTGGTTATTTTGAATATGCAAAGGAAACAACCATTGAAGCAGATGATGCATCATTAACCTGTGAAGCCACAGTAAGCAAGATAAACTCTTTCCTAGAAGGCGCAATCCATTCATCATGCGAAGGAATTATGGTGAAATCGTTAGATGTTGATGCTGGATATTCTCCATCAAAGCGCTCAGACACATGGTTAAAGGTGAAGCGAGATTATTTGGATGGTTTAAATGATTCTCTTGATTTAGTACCAATTGGTGGTTGGTATGGAAATGGAAGGAAGGCTGGATGGTATAGCCCATTTCTCATGGCATGTTACAATCCTGAAACAGAGGAATACCAAAGCGTATGCCGTGTGATGTCTGGGTTCTCAGATGCCTTCTACATTGAGATGAAAGAATTCTTTTCTGAGGACAAAATATTGTCAAAAAAGCCACCGTATTACCGGACAGCCGAGGTACCAGACAAATGGTTCTGTCCACTGCTTGTTTGGGAAATAAGAGGTGCAGAATTTACGGTATCTCCGGTTCACGAAGCTGCGATTGGTCTGGTTCATCCGTCTCGCGGCATCTCAATCAGATTCCCTAGATTTGTCCGCAATGTGTTGGACAGGAACCCAGAAGAATGCAGCACAGCTGCTGATATAGCTGAAATGTTTCATTCTCAGGCTAGGAAGATGGATGTTGCCACTGAAGATTAA 4185 0.4127 MPKSQTLSSVELFHSALQSLNSSPPSPSVSFQPHHLPLPPSFPQSKIIPKTRFVVDAFRHAGDYSVAYFLSHFHSDHYTGLGSNWCKGIVFCSYTTARLVVEVLGVPSKFVVPLRLCEPVEIDGCEVTLIDANHCLGAVQFLFKIPGVDGKCERYVHTGDFRFSKAMRSEPLLAAYVGADAVFLDTTYCHPKFQFPSQEESVAYIVDVVGRVESENDCSTRNVLFLVATYVVGKEKILLELARRFKRKVHVDARKMEVLRVLGYGEGGEFTDDSTQTNIHVVGWNVLGETWPYFRPNFVRMKEIMTERGYSEVVGFVPTGWTYEVKRNKFTVKSKDSFQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGVDVDKTDSRHVEKMMKHFAGLVDETANKQDFLKGFHCTSSEGGFKFDKVDDDSTKPGQNMETEVKLFDKGDDKNINPDIVLNLSSTLEETGLQDPTSLKGEETEKISQEMSSYLPAWVTEGQVLELISNASGNVVEAVSNFYERETEFHNQVFSCQTSVSASTCLSNDSDLLSKPPAVSRKTCMGVDISPSQNFKLSTPRNSVASSISPAKRKRNSVRKLNKKVKVHTKSESSGSKQSMITKFFTKAMPDITQSGNFEASTDEIPEVEDLPQLDVEKAYKDEINQFMQIINGNESLKNYAITIIEKTKGDVNKALDIYYCNPGNFDENEKSVQVECKVDHSSEKKCVSQELRSTPDISLQSISRENPDVTLVSLPPKEYNPKEHACWRDGESAPYLHLVRTFNLLEDEKGKIKATSMLCNMFRSLLALSPADVLPAVYLCTNRIAAVHENKELNIGGSLITAALEEACGTTRLKIKEMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFFALHKISLQTGNGSTLRKKSIIVNLMCSCREKEIKFLVRTLARNLRTGAMIRTVLPALAQAVLMNSCPALLQDGTAENLKEKLQGLSAEIMEAYNILPNLDLLIPSLMNKGTNFCASSLSMVPRIPIKPMLAKITNGIPQVLKLFQNKAFTCEYKYDGQRAQIHKLSDGSIRVFSRNGDETTSRFPDLIDIIKEFCKPASVTFILDAEVVGIDRKNGYRYMAFQELSSRGRGSKDASVTTDSIKVDICLFVFDIMFANGQQLLGLPLRERRKHLKDLFHDEKLGYFEYAKETTIEADDASLTCEATVSKINSFLEGAIHSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLDGLNDSLDLVPIGGWYGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDAFYIEMKEFFSEDKILSKKPPYYRTAEVPDKWFCPLLVWEIRGAEFTVSPVHEAAIGLVHPSRGISIRFPRFVRNVLDRNPEECSTAADIAEMFHSQARKMDVATED 1394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g00588 1394 Gene3D - 1236 1393 IPR012340 -
Accr2g00588 1394 Gene3D - 744 1013 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Accr2g00588 1394 Gene3D DNA ligase/mRNA capping enzyme 1040 1171 - -
Accr2g00588 1394 Coils Coil 958 978 - -
Accr2g00588 1394 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 744 993 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Accr2g00588 1394 Pfam DNA repair metallo-beta-lactamase 269 373 IPR011084 -
Accr2g00588 1394 FunFam DNA ligase 1040 1171 - -
Accr2g00588 1394 SUPERFAMILY Metallo-hydrolase/oxidoreductase 66 371 IPR036866 -
Accr2g00588 1394 Gene3D - 48 370 IPR036866 -
Accr2g00588 1394 MobiDBLite consensus disorder prediction 565 605 - -
Accr2g00588 1394 Gene3D - 1021 1235 - -
Accr2g00588 1394 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 281 1386 - -
Accr2g00588 1394 CDD OBF_DNA_ligase_I 1240 1383 - -
Accr2g00588 1394 ProSiteProfiles ATP-dependent DNA ligase family profile. 1122 1269 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Accr2g00588 1394 Pfam ATP dependent DNA ligase C terminal region 1257 1361 IPR012309 GO:0003910|GO:0006281|GO:0006310
Accr2g00588 1394 CDD SNM1A-1C-like_MBL-fold 39 191 - -
Accr2g00588 1394 MobiDBLite consensus disorder prediction 565 582 - -
Accr2g00588 1394 FunFam DNA ligase 1236 1393 - -
Accr2g00588 1394 FunFam DNA ligase 194 348 - -
Accr2g00588 1394 Pfam DNA ligase N terminus 765 941 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Accr2g00588 1394 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 1006 1237 - -
Accr2g00588 1394 Pfam ATP dependent DNA ligase domain 1011 1231 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Accr2g00588 1394 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1035 1043 IPR016059 GO:0003909
Accr2g00588 1394 Gene3D - 194 348 - -
Accr2g00588 1394 CDD Adenylation_DNA_ligase_I_Euk 1002 1234 - -
Accr2g00588 1394 SUPERFAMILY Nucleic acid-binding proteins 1240 1384 IPR012340 -
Accr2g00588 1394 NCBIfam ATP-dependent DNA ligase 823 1381 IPR000977 GO:0003910|GO:0005524|GO:0071897
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g00588 Accr-Chr2 13719054 13733183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g00588 740 1384 Core DNA Replication Machinery Family AT1G08130 38.949 2.01e-163 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g00588 - - gmx:100807673 2008.8