LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr2g00497	ATGGCTGCTTGGAATCCCTCCTCCGATTCACCCCCACCAATTTCTCTCACCGCCGATCAGCTCAAGCACTGTAATGAAGCGCTTGCCAGCTTTAGGGAGAGAAAGCCGGAGATGATCAAGGAAGAGTTCAAACGCTTGGAGGACAATGCGATAACACTAACTGAGCTGGCGAGAAGATGCACTGTAGCTCTAAATGACGTAAATCTACCCAAAAATCGGTATCCGGAAGATGTCCTGCCATTTGACGATAACAGGGTTGTTCTGGAATCAAGTTCAGATCATAGACCTACGGCCATGGGATATATCAATGCAAGCTTTCTCTCGATCTCTTCCTCTGAGAGTGTTTCTCAGTTCCTAGCTACACAAGGTCCACTGCCACATACTCGTGAGGATTTCTGGGAAATGATTAAGTGTGACGATTATTTTCAAGCTGACGGTGAACCTATGAAGTTTGGTAACATCTCTATTGTTTGTGAATGGATGGAAACTGTTGAAAACTCATTGGTACTGCGCCTTTTGAAGGTGCATAGAAAGGAAAATCCTCCCTTTTCTGTTTTGCATATTCATTATCCTGAGTGGCCTGACCATGACGTTCCCCACGATACACTTGCTATGCGTGCAATTTTTAAGAGATTGTACCATGTACCACCAAAACTTGGCCCAATAGTGGTGCATTGCAGTGCAGGTCTTGGAAGAACTGGAACATACTGTGCTGTTCACAATACAATTCAGAGAATTCTTGTTGGTGAAAAGTCTGCCTTGGATCTTTATAATACCTTACTAGTCTTCAGGTCGCAGCGATATGGAATGGTTCAGAGACAGAGCCAGTACAATTTCTGCTATAAAGCTATAGTAGAGGCACTGGATGAACTTGTTTCTAATCATCATCAGCAATGA	897	0.4381	MAAWNPSSDSPPPISLTADQLKHCNEALASFRERKPEMIKEEFKRLEDNAITLTELARRCTVALNDVNLPKNRYPEDVLPFDDNRVVLESSSDHRPTAMGYINASFLSISSSESVSQFLATQGPLPHTREDFWEMIKCDDYFQADGEPMKFGNISIVCEWMETVENSLVLRLLKVHRKENPPFSVLHIHYPEWPDHDVPHDTLAMRAIFKRLYHVPPKLGPIVVHCSAGLGRTGTYCAVHNTIQRILVGEKSALDLYNTLLVFRSQRYGMVQRQSQYNFCYKAIVEALDELVSNHHQQ	298

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr2g00497	298	PANTHER	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	28	136	-	-
	Accr2g00497	298	ProSiteProfiles	PTP type protein phosphatase domain profile.	39	287	IPR000242	GO:0004725\|GO:0006470
	Accr2g00497	298	SMART	ptp_7	184	286	IPR003595	-
	Accr2g00497	298	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	31	289	IPR029021	-
	Accr2g00497	298	ProSitePatterns	Tyrosine specific protein phosphatases active site.	224	234	IPR016130	GO:0016311\|GO:0016791
	Accr2g00497	298	Gene3D	Protein tyrosine phosphatase superfamily	13	294	IPR029021	-
	Accr2g00497	298	SMART	PTPc_3	38	289	IPR000242	GO:0004725\|GO:0006470
	Accr2g00497	298	PRINTS	Protein tyrosine phosphatase signature	118	138	IPR000242	GO:0004725\|GO:0006470
	Accr2g00497	298	PRINTS	Protein tyrosine phosphatase signature	254	269	IPR000242	GO:0004725\|GO:0006470
	Accr2g00497	298	PRINTS	Protein tyrosine phosphatase signature	221	239	IPR000242	GO:0004725\|GO:0006470
	Accr2g00497	298	PRINTS	Protein tyrosine phosphatase signature	270	280	IPR000242	GO:0004725\|GO:0006470
	Accr2g00497	298	PRINTS	Protein tyrosine phosphatase signature	100	107	IPR000242	GO:0004725\|GO:0006470
	Accr2g00497	298	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	220	278	IPR000387	GO:0016311\|GO:0016791
	Accr2g00497	298	Pfam	Protein-tyrosine phosphatase	68	136	IPR000242	GO:0004725\|GO:0006470
	Accr2g00497	298	Pfam	Protein-tyrosine phosphatase	137	286	IPR000242	GO:0004725\|GO:0006470

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr2g00497	Accr-Chr2	11289968	11310558	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr2g00497	19	294	Protein tyrosine phosphatase (PTP) family	AT1G71860	54.817	5.63e-115	333

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr2g00497	-		-	cave:132184609	368.622

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Accr2g00497	2	11289968	11310558	Accr2g00497	2	11289968	11310558	ECH