Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g00489 ATGCAGGCGAAAATTTCCCCTAATCCACCCTCTTTTCCAGATTTCAGTTTGCAACAAAGTAATCAACTGAGGTGGGAAGATCGCTCTATGTCAGACAACGATATCTGGATGGAAGCCCTATTCAGAGAATTCAACCAAGCATGTGGAACCCAGTCATTGCTTTCGTGTGGTTCCAACGATGGGGTCAAGATTCCGAATCCAGAAAATTGTCAGATGGGTGACACGTCACGAGCCGGTAAACTCCCAGCAGATTGGGATCCTAGCATAATGTTGGAAAATCTTTCTTTCCTGGAAGATAAGATTCATCAGCTCCAGGGCCTATTGCATTTGATTGTTGATAAGAAAGGTCAACAATTCGGACAACCCGAGGAAATTATAACTCAAGAGAAGCGGCTTATCACGGCCAATCTGACATCAATCATTGTTCAATTGATCTCTACAGCTGGAAGTCTTCTTCCTTCTGTCAGGCTTGCTTCTTCAAACACCAGTCCATCTGTGGGACAGCATGGCCAGATTCCTGGCATTAATTTTCTGTCTGGATTAGATCCGAGCAGTAGTAGTATCCAACCACAACATGATATCATAGATAATATATGTGATCAATCCAACCAGATTGATCATACTAACATGTGTGAAATGGAGCAAAACCACATGGAAGAACACGAATTGAAGGATGAAGAGGATGTGGATGAGGGCGAGAACCTTCCACCAGGCTCCTTTGAGATTTTACAGCTAGAAAAAGAGGTAATCCTTGCTCCTCACACACACTTCTGTACAATATGTGGTAAGGGATTCAAGAGAGATGCGAATCTTCGGATGCATATGAGAGGCCACGGCGACGAGTACAAAACCCCAGAAGCGCTTGCAAAACCTAACAAAGAATCCGTGTCTGAACCAAAGCTCATCAAGAGATATTCCTGTCCCTACCTTGGCTGCAAGCGTAATAAGGATCACAAGAAGTTTCAACCTTTGAAGACTATTTTGTGTGTGAAGAACCATTACAAAAGAAGTCACTGCGACAAGAGTTACATTTGCAGCCGGTGCCACACGAAGAAATTTTCAGTCATGGCGGACCTTAAAACTCACGAAAAGCACTGTGGTAAGGATAAATGGCTCTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTGTTTCAAGGCCATACACCAGCAATACCATTGGATGAATCAAAAGCACCAGCTGGGCAAGCTGAGATGGAAATCAATGAGAACAACAACAACAACAATAATAATAAGGGAGGAAGCATTAACTTGAGCTTTGGATCAAGTGCTTCTTGTTGTGAAAATGGGATTCAAAACATTATGGATGGGAAAGGTATTACTGATGATCCTATCAGTTACCTATCATCATTGAACTTTGAAACCTGTAACTTTGCTGAATTCAATGATTTTCCTCGACCCCCGTTTGAAGACGCCACTGAAGGTTTGTTCCCTTTTCTCATGTCAGAATCCTTCAATTATTCTCCAAAATCTGGGGGAGAATCATGTCCTGACAATCTGGTGTGA 1548 0.4257 MQAKISPNPPSFPDFSLQQSNQLRWEDRSMSDNDIWMEALFREFNQACGTQSLLSCGSNDGVKIPNPENCQMGDTSRAGKLPADWDPSIMLENLSFLEDKIHQLQGLLHLIVDKKGQQFGQPEEIITQEKRLITANLTSIIVQLISTAGSLLPSVRLASSNTSPSVGQHGQIPGINFLSGLDPSSSSIQPQHDIIDNICDQSNQIDHTNMCEMEQNHMEEHELKDEEDVDEGENLPPGSFEILQLEKEVILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPEALAKPNKESVSEPKLIKRYSCPYLGCKRNKDHKKFQPLKTILCVKNHYKRSHCDKSYICSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKAPAGQAEMEINENNNNNNNNKGGSINLSFGSSASCCENGIQNIMDGKGITDDPISYLSSLNFETCNFAEFNDFPRPPFEDATEGLFPFLMSESFNYSPKSGGESCPDNLV 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g00489 515 SUPERFAMILY beta-beta-alpha zinc fingers 255 280 IPR036236 -
Accr2g00489 515 ProSitePatterns Zinc finger C2H2 type domain signature. 258 278 IPR013087 -
Accr2g00489 515 SMART c2h2final6 343 365 IPR013087 -
Accr2g00489 515 SMART c2h2final6 256 278 IPR013087 -
Accr2g00489 515 SMART c2h2final6 305 338 IPR013087 -
Accr2g00489 515 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 283 IPR013087 -
Accr2g00489 515 Gene3D Classic Zinc Finger 240 309 - -
Accr2g00489 515 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 78 426 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g00489 Accr-Chr2 10880473 10882020 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g00489 223 512 C2H2 Transcription Factor Family AT1G34370 67.797 3.24e-140 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr2g00489 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g00489 - - pcin:129292903 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g00489 2 10880473 10882020 Accr2g00489 2 10880473 10882020 ECH