Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g00485 ATGCAGCATAGTAATCAACAGAGGTGCGAAGATCCCTCTATGTCAGATTACGGTATCCGGATGGAGACCCTGTTTAAAGAATGCAACCAAGCCTGTGGAACCAAGTCCTTGCTTCCATGTGGTTCCAATGATGGGATCAAGATCCCCAATCAAGAAAATTGTCAGATGGGTGACACATCACAAACTGGTAAACTTCAAGATTGGGATCCCAGCATAATGTTGGAAAATCTTTCTTTCCTCGAAGATAAGATTCATCAGATCCGGGGCCTGTTGCATTTGATTGCTAATAAGAAAGGTCAACAATTAGGACAACCCGACGAAATTATAACTCAAGAGAAGCAGCTTATCACAGCCAATCTGACATCAATCATCGTTCAACTGATCTCCACAGCAGGAAGTCTTCTTCCTTCTGTCAAGCTTGCTGCCTCAAACACCAGTCCATCGGTGGGACAGCATGGCCAGATTCCTGGGATTACTTTTCCGTCAGGATTAGGTCCAAGTAGTAGTAGTATCCAACCACAACATGATATCAGAGATAAAATAAGCGATCAATCCAACCAGATTGATCTTACTAACATGTGCGAAATGGAGCAAAACCACATGGAAGAACATGAATTGAAAGATGAAGAGGATGGGGATGAGGGTGAGAACCTTCCACCGGGTTCCTTTGAGATTTTACAGCTAGAAAAAGAAGAAATCCTTGCTCCTCATACACACTTCTGTACAATATGTGGTAAGGGATTCAAGAGAGATGCAAATCTTCGGATGCATATGAGAGGCCATGGTGACGAGTACAAAACCCCTGAAGCGCTCGCAAAACCTAACAAAGAATCCGAGTCTGAACCGAAGCTCATCAAGAGGTATTCCTGTCCCTACCCTGGCTGCAAGCGTAATAAGGATCACAAGAAGTTCCAACCTTTGAAGACCATTCTATGTGTGAAAAACCATTACAAAAGAACTCACTGCGACAAGAGTTACATTTGCAGCCGGTGCCACACAAAGAAATTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAGCACTGTGGTAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGGCACATTGCTCTGTTCCAAGGCCATACACCAGCTATACCATTGGATGAATCAAAAGCACCAGTTGGGCAAGCTGATATGGAAATCACTGAGAATAACAACAACAACAATAATAATAAGGGAGGAAGTATTAACTTGAGCTTTGGTTCAAATGCTTCGTCTTGTGAAAATGGGATTCAAAACATGATGAATGTGAAAGGTATTACTGATGATCCTATCAGTTACCTCTCATCATTGAACTTTGAAACCTGTAACTTTGGCGAGTTCAATGATTTTCCTCGACCCCCATTTGAAGACACCACCAAAGGTTCGTTTCCTTTTCTCATGTCCGAATCCTTCAATTATTCTCCAAAATGTGGAGGAGAATCATGTCCTAACAATCTGTTGTGA 1497 0.4208 MQHSNQQRCEDPSMSDYGIRMETLFKECNQACGTKSLLPCGSNDGIKIPNQENCQMGDTSQTGKLQDWDPSIMLENLSFLEDKIHQIRGLLHLIANKKGQQLGQPDEIITQEKQLITANLTSIIVQLISTAGSLLPSVKLAASNTSPSVGQHGQIPGITFPSGLGPSSSSIQPQHDIRDKISDQSNQIDLTNMCEMEQNHMEEHELKDEEDGDEGENLPPGSFEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPEALAKPNKESESEPKLIKRYSCPYPGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYICSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKAPVGQADMEITENNNNNNNNKGGSINLSFGSNASSCENGIQNMMNVKGITDDPISYLSSLNFETCNFGEFNDFPRPPFEDTTKGSFPFLMSESFNYSPKCGGESCPNNLL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g00485 498 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 266 IPR013087 -
Accr2g00485 498 SUPERFAMILY beta-beta-alpha zinc fingers 238 263 IPR036236 -
Accr2g00485 498 MobiDBLite consensus disorder prediction 201 221 - -
Accr2g00485 498 ProSitePatterns Zinc finger C2H2 type domain signature. 241 261 IPR013087 -
Accr2g00485 498 Gene3D Classic Zinc Finger 222 292 - -
Accr2g00485 498 SMART c2h2final6 326 348 IPR013087 -
Accr2g00485 498 SMART c2h2final6 239 261 IPR013087 -
Accr2g00485 498 SMART c2h2final6 288 321 IPR013087 -
Accr2g00485 498 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 59 451 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g00485 Accr-Chr2 10826538 10828034 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g00485 206 498 C2H2 Transcription Factor Family AT1G34370 66.779 6.47e-138 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr2g00485 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g00485 - - qsa:O6P43_004100 672.544