Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g00484 ATGCCCCCTCAGAATCATCAAGTGCAGGCAAAAGCTTCCCCTAATTCACCCTCTCTTCCAGATTTCATTATGCAGCATAGTAATCAACAGAGGTGCGAAGATCCCTCTATGTCAGATTACGGTATCCGGATGGAGACCCTGTTTAAAGAATGCAACCAAGCCTGTGGAACCAAGTCCTTGCTTCCATGTGGTTCCAATGATGGGATCAAGATCCCCAATCAAGAAAATTGTCAGATGGGTGACACATCACAAACTGGTAAACTTCAAGATTGGGATCCCAGCATAATGTTGGAAAATCTTTCTTTCCTCGAAGATAAGATTCATCAGATCCGGGGCCTGTTGCATTTGATTGCTAATAAGAAAGGTCAACAATTAGGACAACCCGACGAAATTATAACTCAAGAGAAGCAGCTTATCACAGCCAATCTGACATCAATCATCGTTCAACTGATCTCCACAGCAGGAAGTCTTCTTCCTTCTGTCAAGCTTGCTGCCTCAAACACCAGTCCATCGGTGGGACAGCATGGCCAGATTCCTGGGATTACTTTTCCGTCAGGATTAGGTCCAAGTAGTAGTAGTATCCAACCACAACATGATATCAGAGATAAAATAAGCGATCAATCCAACCAGATTGATCTTACTAACATGTGCGAAATGGAGCAAAACCACATGGAAGAACATGAATTGAAAGATGAAGAGGATGGGGATGAGGGTGAGAACCTTCCACCGGGTTCCTTTGAGATTTTACAGCTAGAAAAAGAAGAAATCCTTGCTCCTCATACACACTTCTGTACAATATGTGGTAAGGGATTCAAGAGAGATGCAAATCTTCGGATGCATATGAGAGGCCATGGTGACGAGTACAAAACCCCTGAAGCGCTCGCAAAACCTAACAAAGAATCCGAGTCTGAACCGAAGCTCATCAAGAGGTATTCCTGTCCCTACCCTGGCTGCAAGCGTAATAAGGATCACAAGAAGTTCCAACCTTTGAAGACCATTCTATGTGTGAAAAACCATTACAAAAGAACTCACTGCGACAAGAGTTACATTTGCAGCCGGTGCCACACAAAGAAATTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAGCACTGTGGTAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGGCACATTGCTCTGTTCCAAGGCCATACACCAGCTATACCATTGGATGAATCAAAAGCACCAGTTGGGCAAGCTGATATGGAAATCACTGAGAATAACAACAACAACAATAATAATAAGGGAGGAAGTATTAACTTGAGCTTTGGTTCAAATGCTTCGTCTTGTGAAAATGGGATTCAAAACATGATGAATGTGAAAGGTATTACTGATGATCCTATCAGTTACCTCTCATCATTGAACTTTGAAACCTGTAACTTTGGCGAGTTCAATGATTTTCCTCGACCCCCATTTGAAGACACCACCAAAGGTTCGTTTCCTTTTCTCATGTCCGAATCCTTCAATTATTCTCCAAAATGTGGAGGAGAATCATGTCCTAACAATCTGTTGTGA 1566 0.4227 MPPQNHQVQAKASPNSPSLPDFIMQHSNQQRCEDPSMSDYGIRMETLFKECNQACGTKSLLPCGSNDGIKIPNQENCQMGDTSQTGKLQDWDPSIMLENLSFLEDKIHQIRGLLHLIANKKGQQLGQPDEIITQEKQLITANLTSIIVQLISTAGSLLPSVKLAASNTSPSVGQHGQIPGITFPSGLGPSSSSIQPQHDIRDKISDQSNQIDLTNMCEMEQNHMEEHELKDEEDGDEGENLPPGSFEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPEALAKPNKESESEPKLIKRYSCPYPGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYICSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKAPVGQADMEITENNNNNNNNKGGSINLSFGSNASSCENGIQNMMNVKGITDDPISYLSSLNFETCNFGEFNDFPRPPFEDTTKGSFPFLMSESFNYSPKCGGESCPNNLL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g00484 521 MobiDBLite consensus disorder prediction 1 21 - -
Accr2g00484 521 SUPERFAMILY beta-beta-alpha zinc fingers 261 286 IPR036236 -
Accr2g00484 521 MobiDBLite consensus disorder prediction 224 244 - -
Accr2g00484 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 289 IPR013087 -
Accr2g00484 521 SMART c2h2final6 262 284 IPR013087 -
Accr2g00484 521 SMART c2h2final6 349 371 IPR013087 -
Accr2g00484 521 SMART c2h2final6 311 344 IPR013087 -
Accr2g00484 521 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 82 474 IPR044300 GO:0010044|GO:0010447
Accr2g00484 521 Gene3D Classic Zinc Finger 245 315 - -
Accr2g00484 521 ProSitePatterns Zinc finger C2H2 type domain signature. 264 284 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g00484 Accr-Chr2 10826469 10828034 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g00484 229 521 C2H2 Transcription Factor Family AT1G34370 66.779 8.22e-138 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr2g00484 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g00484 - - qsa:O6P43_004100 683.33