Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g00454 ATGTCTGGAAACGCAAGTTGCGCTGTTTACATAGGCAATCTAGATGAGAGGGTCACGGAGAGGATCTTATATGATATATTAATTCAAGCAGGACGAGTGGTGAACCTGTATATTCCTAGAGATAAGGAATCTGAGAAACATAAAGGATTCGCTTTTGCAGAATATGAAAGTGAGGAGATTGCAGATTATGCTATCAAGCTTTTCTCAGGCCTTGTGACACTCTACAAGAGAACACTGAAGTTTGCGAAATCTGGCCAAGACAAAGCTACTCCAAATGGTTCTGCAGTGGCTACACCATCGTCAAATTCTTCTAACCGATCAAGGCCCCACCCTGTGCCAATAAATACTACAGAAATTTCGCCACACTCTGCTAGGTTACCAACACCTAGCCGAATTTCAGATTACCCTGTAAATTACTCCCAAGTTACCCGCCGAGTAGTTGACCAATCTAGTGAGCATGGATCTCTCTACAATAACAACAATTATGAATACAGCCGGAGAGTTTTTGAGCCAACATTGGATAGCTTTAGCCGGTATAGGCCACGTCGTTATGATACAAGTAACCCAATCTCTTTCCCACATTACTAA 588 0.4235 MSGNASCAVYIGNLDERVTERILYDILIQAGRVVNLYIPRDKESEKHKGFAFAEYESEEIADYAIKLFSGLVTLYKRTLKFAKSGQDKATPNGSAVATPSSNSSNRSRPHPVPINTTEISPHSARLPTPSRISDYPVNYSQVTRRVVDQSSEHGSLYNNNNYEYSRRVFEPTLDSFSRYRPRRYDTSNPISFPHY 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g00454 195 SUPERFAMILY RNA-binding domain, RBD 6 79 IPR035979 GO:0003676
Accr2g00454 195 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Accr2g00454 195 Gene3D - 2 94 IPR012677 -
Accr2g00454 195 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 191 - -
Accr2g00454 195 CDD RRM1_SF3B4 9 83 IPR034158 -
Accr2g00454 195 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Accr2g00454 195 MobiDBLite consensus disorder prediction 85 135 - -
Accr2g00454 195 SMART rrm1_1 8 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g00454 Accr-Chr2 10297873 10299461 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g00454 9 72 Eukaryotic Initiation Factors Gene Family AT4G34110 32.812 5.28e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g00454 K12831 - gmx:100803118 276.559