Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g00396 ATGATCGGACCAAATTTCATGGATGAGATAGACTGTGGCAATTTCTTCGACCACATTGATGACCTCCTCGATTTCCCCGCCGAAGATGTGGATGCCGCTGCTTTGCCATCCGCCACCGTGAATTGCAACTCCTTCCCCGCCGTCTGGCCCGGCGAGTCCGACTCCTTGCCTGCCTCTGACTCTGTTTTCTCTGGCAACAACACTTCCGACCTCTCCACTGAGCTCTCAGTTCCGTATGACGAAATTGTCCATTTGGAATGGCTTTCGAACTTTGTGGAGGACTCGTTCACTGCTGGAAGCCTCACCACGAAGGAAGTGGAGCAATCTTGCGTCACCAATATCAACGACTCAGCAAACAACCAATTCCAGACTTCAAGCCCGATTTCTGTCCTCGAGAGCAGCAGCTCCTGCTCCCGGGAGAAGCCGTTGGCGGCGACACCTCGAAGCCCGCCGGAAATGGTTGTCCCCGTGCCTTGTGGTGGACGTGCACGCAGCAAGCGCCCGCGTCCCGCCACATTCAATCCTCGTTCCGCGATGCAGCTCATTTCCCCTGCATCCTCTGTCGGTGAGAACACTACGCAGCGAAATTCAGATTGTGAGAATTTCGTGGAGTCTCATCCGGTTATCAAGATACCGAAGCAATCTTCAGGGGAGCACAAGAAGAAGAAGAAGATCAAATTGACTCTTCCATTAGGCCCTGCTGATTTGAATCAGCAGAATGCTTCATCACAGGCAGTGAGGAAATGTATGCATTGTGAGATAACAAAGACACCACAATGGAGGGCAGGTCCAATGGGGCCAAAAACACTGTGCAATGCTTGTGGGGTTCGATACAAGTCCGGAAGGCTATATCCAGAATACAGACCGGCAGCTAGCCCTACGTTTTGCCCATCGTTGCACTCGAATTCCCACAAGAAGGTGCTTGAAATGAGAGGCAAAACACCACTTACTGATGCTGCACCCGAGCTCATTCCAAACACTAACAGCAGCCTTCCCCTGGATTACATGTGA 1011 0.5203 MIGPNFMDEIDCGNFFDHIDDLLDFPAEDVDAAALPSATVNCNSFPAVWPGESDSLPASDSVFSGNNTSDLSTELSVPYDEIVHLEWLSNFVEDSFTAGSLTTKEVEQSCVTNINDSANNQFQTSSPISVLESSSSCSREKPLAATPRSPPEMVVPVPCGGRARSKRPRPATFNPRSAMQLISPASSVGENTTQRNSDCENFVESHPVIKIPKQSSGEHKKKKKIKLTLPLGPADLNQQNASSQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLYPEYRPAASPTFCPSLHSNSHKKVLEMRGKTPLTDAAPELIPNTNSSLPLDYM 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g00396 336 FunFam GATA transcription factor 238 322 - -
Accr2g00396 336 PANTHER GATA TRANSCRIPTION FACTOR 16 314 - -
Accr2g00396 336 ProSitePatterns GATA-type zinc finger domain. 249 274 IPR000679 GO:0006355|GO:0043565
Accr2g00396 336 Pfam GATA zinc finger 249 282 IPR000679 GO:0006355|GO:0043565
Accr2g00396 336 SMART GATA_3 243 293 IPR000679 GO:0006355|GO:0043565
Accr2g00396 336 PIRSF Txn_fac_GATA_plant 1 331 IPR016679 GO:0003677|GO:0005634|GO:0045893
Accr2g00396 336 MobiDBLite consensus disorder prediction 133 174 - -
Accr2g00396 336 CDD ZnF_GATA 248 295 IPR000679 GO:0006355|GO:0043565
Accr2g00396 336 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 247 306 - -
Accr2g00396 336 ProSiteProfiles GATA-type zinc finger domain profile. 243 279 IPR000679 GO:0006355|GO:0043565
Accr2g00396 336 Gene3D - 243 293 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g00396 Accr-Chr2 9237397 9238554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g00396 19 318 C2C2-Gata Transcription Factor Family AT4G32890 38.361 4.38e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Accr2g00396 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g00396 - - gmx:100816641 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g00396 2 9237397 9238554 Accr2g00396 2 9237397 9238554 ECH