Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g00380 ATGGGAAATGTTGAAATTCCCAATTGGCTAAAAGACTTGCCATTGGCTCCGGAATTTCGCCCAACTGATACCGAATTCGCCGACCCAATTGCTTACATTTCAAAGATTGAGAAAGAAGCTAGTGCTTTTGGGATATGTAAGATTATCCCTCCTTTACCCAAGCCTTCTAAAAGATATGTCTTCTCTAATTTAAACAAGTCTCTTTTGAAGAGCCCGGAATTGGCTTCAGATAGTAATTCGGTTGGAGTTAGTAATTCTTTGAAAATTATTTCTGGCGATGGTGGTAGCGATGGGGAGGCTCGGGCTGTGTTTACCACAAGGCATCAAGAATTGGGGCAGGGTATTAAAAGAACCAAAGGAACAATTCAAAGCCCACTTTCAGGTGTTCATAAACAAGTATGGCAGAGTGGGGAAGTTTATACACTTGAACAGTTTGAGTCTAAATCAAAGGCTTTTGCAAGAAGTGTACTAGGCATGGTTAAGGAGGTTTCTCCGCTGGTTATAGAGGCTATGTTTTGGAAGGCAGCTTCAGAGAAGCCTATATATGTGGAGTACGCCAATGATATGCCTGGTTCTGCTTTTGGGGAATCCAAGGGTCAATTTCATTACATTCATAGAAGGAGAAGGAAAAAGGCTTATTATCAAAGGAGTCTAGATACTTCAGATTGCCAAGAACCCAAAATGGATGAAATAGAAGATACCCAGACTGGAGAAAGTAAGGATGCCTCTGCCCATAATCATGCAGACTTATGCTTACGGTCATCAAATTCAACTTCAAAACCATCAACATTTTCGTCAAATGAAGCCCCACTTTCTATTAGGCAGAAGAGCTCAGATTCCAGTGACGACATGGAAGGTACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAATTTACAAGTCATTGCACGTTCACAGGGCTCGCTAACACGTTTCATGCCAGATGATATTCCTGGTGTCACTTCCCCCATGACTTGGTATGCTGTTCCTGGAGATTATGCCTCTGCTTTCGAGGAACTCATCCGCACGGAGGTTGGTGGTGGTAATATTGATCACTTAGCTGCTCTGACTCTGTTGGGGGAGAAGACAACCCTTCTATCACCAGAGGCAGTCGTTGCATCTGGGATCCCTTGTTGCAGGTTGACGCAGAACCCTGGAGAATTTGTTGTGACCTTTCCAAGGGCTTATCATGTAGGATTCAGCCATGGCTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCACGATGGCTCACAGTAGCCAAGGAAGCTGCAGTGCGTAGGGCTGCAATGAATTATCTTCCCATGCTTTCCCATCAGCAACTGCTTTACCTATTGACTATGTCTTTTGTTTCAAGGGTGCCAAGAACATTGTTACCAGGTGTGCGGAGTTCCCGTCTAAGAGACCGTCAAAAAGAAGAAAGAGAATTGTTAGTAAAAAGATCTTTTATAGAAGATATGCAGCAAGAAAACAAATTGCTATCCATTCTTCTTGGAAAGCAATCAACTTATCATGCTGTTTTATGGAATGCTGATTTACTCCCAGATTCGAGCAAGGATTCTCCTCAGTTGCCTGACTTAACTTCTACAACTAGAACCTCTATGGAAGACATGTCAAATTTGAGTTCTGCTGATAAGAGCAACCACAGTTGTCTGTTTGATGAAATGAGCTTCTATATGGAGAATCTGACTGAATTTTATATTGGTGATGACAGTCTTCCATGTCACTTCCAAACTGATTCAGGAGCATTGGCATGTGTGGGTTGTGGAATTCTTGGTTTTCCTTTCATGGCTGTGGTACAACCATCAGAGAGATCAGCAATGGAATTTCAGCCAGTCTCAGGGAATGCTCTTTCTGTTACTGATCGTCCTTCAACAAATGAACCATCGAAACTACCATTAATGAACTGTGATAAGGGTTGGAACACCTCTTGCAAATTTTTGAGGCCACGAATTTTCTGCCTGGAGCATGCTGTTCAGATTATGGAGATGCTGCATTGTAAAGGTGGAGCTAGTGTGCTTGTAATTTGCCATTCAGACTACCAGAAGATCAAGGCACATTCCAGGGCAGTAGCAGATGAGATAGGCTGTGCTTTTCATTATAATGAGGTTCCATTAGAGACTGCATCCCCTGAAGATTTGACCTTGATAGATCTTGCGATTGATGGTGAAGAACACAATGAATGTGAAGAAGACTGGACGTCTGAATTAGGAATTAACCTGCGGTATTGTGTCAAGGCAAGAAAGAACTCTGCATATGAACAAGCTCCTTTCAAATTGACACTGGGAATGTTGTTCCCTGAGAAATTTCCTGATTCAGATGTCTTGTCTGTAAATTGGCTGTCAAAGAGATTTCGCTCCAGAAGGTTGAATTTAGCTCAGGCGAAAGCATGTCAGAGAAAGAAGGATGATCGGTCAGAAGGAAAGACAGATGGCTCCCCTGCTAAAAAGATGCTTCAGTATTCAAGGAGAAAGTTCAGGTCAAAGCAAGGTTGTTTCTCTGGATCAAACATGGTTCATGTATCTCATAAAGAGTCCATTGATGTGCCAGCTGTCTTGAGTGGAGATTTTGGCATCCAGACTCCTGAAAATAAGCCTAACACTGAGAATTCTACGAGTGTTGTGAAACCTTCAGATTTCACTCTGGAACCTAGGTCAGTGGATGAAAATGCTGGACCACAGTTCCAGAATCAAACTACAGTGGAATTAAAGATAGATGGCCAAAGTAGTTGCACAACACCTGATCATTCTATGTTGCCCTGTAATATGGGTGCCTCAGAAATTGGTAATGAAGACAATGAGATTTTGCATGACAAGATAAATTCTAGCTCACTTACTGTTGTTAAAGACAAAAATATTGACATGCTTAGTCAGAACCTTATAACTGAAGAAATTAACACCAATTGTAGCAATAGCCTGTATTCCAATGAAGCACATCAAGAATTTGAACCTACCCACAAGAGTAATAGGTTGGAAGCTACTTCATCTCCCGTTTCATCAGTAACTCAGCAGACACTTGCCTCCACGGAAGAAAATTCTGATAGTGCTAGAAAGGATCGTATCACTGAAAGCATGAGCTATGGTGCTTCCTTAAAAAAGACAACAGACACTTCTTGCATGAATGTAAACAACATGGAACCTACTGTAAGTTGTGATAGATCAATAAATATGCCGATGTCAAAGATTGACGCTCATGAAGTTCCAAAAGAGCTTTGTGCCTCTGCAGATTCCAGCCCTCAATCTACTTCAGATGTGAGAAACGAACCGGAAATCCATCCAAATAGCATGAATGATGAGGAAATCTGCTCTGGTTTAGGTGCTATGCCATCGTTAAAGGACTCTTCTATGCCAATCCGGGAGTGTTCTACAACTGAGGGAGAGGAATATGCAAGAGATAGCTTAAATGGAAGCAAAGTTCATTCTTCGCATGACTATAGGGAGCTGCCAAGCTCTGAAAGGAAACAGAAGAAAAGAAACAGGGAATTGGAACAGATACAAGAGGCCAATACAAGTTTCCAAGGCTTTGTTAGAAGTCCATGTGAAGGGTTGAGACCGAGGGCTTGCAAAGAAGCCTCTGACCGGGGCATGGCTGAAACCAGCAATTCTGTGGAGGAAAATCAAGAGGTCAAAAGGGCTAGGAGGACATCATCAGATGTTGTGGTGTCTAGCAAGAATAAGAAGAATGCTGTTAAGAGGTCTCACAAGTGTGACCTTGATGGTTGCCATATGAGTTTTACGACCAAGGCAGATTTGATGTTTCACAAGCGCAACCGTTGTCCTCATGATGGGTGTGGAAAGAAATTCAGGTCCCACAAATATGCTGTGCTTCACCAGCGTGTCCATGATGATGACAGGCCTCTCAAGTGCCCATGGGAAGGTTGCTCGATGTCCTTCAAGTGGGCATGGGCTAGGACCGAGCATATACGGGTGCATACCGGGGAAAAGCCATACCACTGCAAGGTTGAGGGATGTGGCCTTTCGTTCAGATTTGTATCTGATTATAGCAGGCACAGGCGAAAAACCGGGCACTATGTAAAGTCAGTTGATTGA 4050 0.4289 MGNVEIPNWLKDLPLAPEFRPTDTEFADPIAYISKIEKEASAFGICKIIPPLPKPSKRYVFSNLNKSLLKSPELASDSNSVGVSNSLKIISGDGGSDGEARAVFTTRHQELGQGIKRTKGTIQSPLSGVHKQVWQSGEVYTLEQFESKSKAFARSVLGMVKEVSPLVIEAMFWKAASEKPIYVEYANDMPGSAFGESKGQFHYIHRRRRKKAYYQRSLDTSDCQEPKMDEIEDTQTGESKDASAHNHADLCLRSSNSTSKPSTFSSNEAPLSIRQKSSDSSDDMEGTAGWKLSNSPWNLQVIARSQGSLTRFMPDDIPGVTSPMTWYAVPGDYASAFEELIRTEVGGGNIDHLAALTLLGEKTTLLSPEAVVASGIPCCRLTQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPRWLTVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFVSRVPRTLLPGVRSSRLRDRQKEERELLVKRSFIEDMQQENKLLSILLGKQSTYHAVLWNADLLPDSSKDSPQLPDLTSTTRTSMEDMSNLSSADKSNHSCLFDEMSFYMENLTEFYIGDDSLPCHFQTDSGALACVGCGILGFPFMAVVQPSERSAMEFQPVSGNALSVTDRPSTNEPSKLPLMNCDKGWNTSCKFLRPRIFCLEHAVQIMEMLHCKGGASVLVICHSDYQKIKAHSRAVADEIGCAFHYNEVPLETASPEDLTLIDLAIDGEEHNECEEDWTSELGINLRYCVKARKNSAYEQAPFKLTLGMLFPEKFPDSDVLSVNWLSKRFRSRRLNLAQAKACQRKKDDRSEGKTDGSPAKKMLQYSRRKFRSKQGCFSGSNMVHVSHKESIDVPAVLSGDFGIQTPENKPNTENSTSVVKPSDFTLEPRSVDENAGPQFQNQTTVELKIDGQSSCTTPDHSMLPCNMGASEIGNEDNEILHDKINSSSLTVVKDKNIDMLSQNLITEEINTNCSNSLYSNEAHQEFEPTHKSNRLEATSSPVSSVTQQTLASTEENSDSARKDRITESMSYGASLKKTTDTSCMNVNNMEPTVSCDRSINMPMSKIDAHEVPKELCASADSSPQSTSDVRNEPEIHPNSMNDEEICSGLGAMPSLKDSSMPIRECSTTEGEEYARDSLNGSKVHSSHDYRELPSSERKQKKRNRELEQIQEANTSFQGFVRSPCEGLRPRACKEASDRGMAETSNSVEENQEVKRARRTSSDVVVSSKNKKNAVKRSHKCDLDGCHMSFTTKADLMFHKRNRCPHDGCGKKFRSHKYAVLHQRVHDDDRPLKCPWEGCSMSFKWAWARTEHIRVHTGEKPYHCKVEGCGLSFRFVSDYSRHRRKTGHYVKSVD 1349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g00380 1349 ProSitePatterns Zinc finger C2H2 type domain signature. 1259 1281 IPR013087 -
Accr2g00380 1349 SMART cupin_9 291 429 IPR003347 -
Accr2g00380 1349 MobiDBLite consensus disorder prediction 215 291 - -
Accr2g00380 1349 ProSiteProfiles Zinc finger C2H2 type domain profile. 1317 1343 IPR013087 -
Accr2g00380 1349 MobiDBLite consensus disorder prediction 977 1023 - -
Accr2g00380 1349 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Accr2g00380 1349 ProSitePatterns Zinc finger C2H2 type domain signature. 1319 1343 IPR013087 -
Accr2g00380 1349 SUPERFAMILY beta-beta-alpha zinc fingers 1297 1340 IPR036236 -
Accr2g00380 1349 Pfam JmjC domain, hydroxylase 322 412 IPR003347 -
Accr2g00380 1349 SUPERFAMILY Clavaminate synthase-like 285 426 - -
Accr2g00380 1349 MobiDBLite consensus disorder prediction 1191 1226 - -
Accr2g00380 1349 MobiDBLite consensus disorder prediction 989 1011 - -
Accr2g00380 1349 MobiDBLite consensus disorder prediction 249 291 - -
Accr2g00380 1349 PANTHER LYSINE-SPECIFIC DEMETHYLASE 322 1283 - -
Accr2g00380 1349 SMART JmjN_1 15 55 IPR003349 -
Accr2g00380 1349 MobiDBLite consensus disorder prediction 520 546 - -
Accr2g00380 1349 MobiDBLite consensus disorder prediction 1072 1160 - -
Accr2g00380 1349 ProSiteProfiles Zinc finger C2H2 type domain profile. 1257 1286 IPR013087 -
Accr2g00380 1349 Gene3D Cupin 9 323 - -
Accr2g00380 1349 MobiDBLite consensus disorder prediction 521 546 - -
Accr2g00380 1349 Gene3D Classic Zinc Finger 1255 1341 - -
Accr2g00380 1349 MobiDBLite consensus disorder prediction 1124 1160 - -
Accr2g00380 1349 SUPERFAMILY beta-beta-alpha zinc fingers 1257 1294 IPR036236 -
Accr2g00380 1349 FunFam Probable lysine-specific demethylase ELF6 1284 1313 - -
Accr2g00380 1349 Gene3D Cupin 324 453 - -
Accr2g00380 1349 MobiDBLite consensus disorder prediction 796 818 - -
Accr2g00380 1349 ProSiteProfiles JmjC domain profile. 223 429 IPR003347 -
Accr2g00380 1349 MobiDBLite consensus disorder prediction 222 247 - -
Accr2g00380 1349 MobiDBLite consensus disorder prediction 796 812 - -
Accr2g00380 1349 ProSitePatterns Zinc finger C2H2 type domain signature. 1289 1311 IPR013087 -
Accr2g00380 1349 Pfam jmjN domain 17 50 IPR003349 -
Accr2g00380 1349 ProSiteProfiles Zinc finger C2H2 type domain profile. 1287 1316 IPR013087 -
Accr2g00380 1349 MobiDBLite consensus disorder prediction 1074 1090 - -
Accr2g00380 1349 SMART c2h2final6 1287 1311 IPR013087 -
Accr2g00380 1349 SMART c2h2final6 1234 1256 IPR013087 -
Accr2g00380 1349 SMART c2h2final6 1257 1281 IPR013087 -
Accr2g00380 1349 SMART c2h2final6 1317 1343 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g00380 Accr-Chr2 8870218 8884366 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g00380 1 825 C2H2 Transcription Factor Family AT5G04240 54.784 0.0 889
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr2g00380 JmjC 1.7e-20 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g00380 - - adu:107467970 1446.41