Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g00345 ATGGCTGGAAAAGAAGAAAACCGTATATTTGTGGGAGGTTTATCTTGGGACGTGACGGAGCGTCAGCTCGAGCATGCCTTTGGTCGGTGCGGCAAAGTTATTGAATGCCAGATCATGTTGGAAAGGGACACAGGTCGTCCGCGTGGATTCGGGTTTATCACATTTGCAGATCGTAGGGGAATGGAGGATGCAATCAAGATAATGCATGGACAAGAGCTTGGTGACCGCATTATCTCTGTCAATAGGGCCCAGCCCAAAATGGGGTCAGATGATCTAGACCATGGTTACTCATCAGGTGGTAGAGGAAATTATGGGGTAGGGGGTGGCAGGGTTGGACAGGATGACTGCTTCAAATGTGGGCGACCTGGCCACTGGGCCCGAGATTGTCCTTTGGCAGGAGGAGGTCGTGGTGGGGGTTCATTTTCTTCACGTCCTAGGTTTGGAGGTGCTGGTGGCCATGGGGATCGCCTTGGTGAACGTGATCGATTTATTGATGATCGTTATGATGGAGGACGTTTTGGAGATAGGGAACGCTTTGACAGCCGGGATAGCAAATATGGTGGCAACCGCGATCACTATTATAGTGACAGGTACCGGGCTAGTGGAGATCGGTTTGCTAATGATTCATATGGTGGTTCAGACCGTTATCCACAAAATAGTTATGGGAAAGATAGAGCCTATGATAGGTATGGCGGTGCAAAAAGTAATGATAGGTATGGAAGTGGAGCACCAGCTCGAGACCAAGGAAGGAGTTTTAGGGGCGGCCGACGTGGTGGTCCCTATGACCGTCCAAGCAGGGGTGGTCGTCCATCTTCGTTCGATCGGTATTGA 831 0.5054 MAGKEENRIFVGGLSWDVTERQLEHAFGRCGKVIECQIMLERDTGRPRGFGFITFADRRGMEDAIKIMHGQELGDRIISVNRAQPKMGSDDLDHGYSSGGRGNYGVGGGRVGQDDCFKCGRPGHWARDCPLAGGGRGGGSFSSRPRFGGAGGHGDRLGERDRFIDDRYDGGRFGDRERFDSRDSKYGGNRDHYYSDRYRASGDRFANDSYGGSDRYPQNSYGKDRAYDRYGGAKSNDRYGSGAPARDQGRSFRGGRRGGPYDRPSRGGRPSSFDRY 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g00345 276 MobiDBLite consensus disorder prediction 134 276 - -
Accr2g00345 276 MobiDBLite consensus disorder prediction 250 276 - -
Accr2g00345 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Accr2g00345 276 MobiDBLite consensus disorder prediction 153 203 - -
Accr2g00345 276 ProSiteProfiles Zinc finger CCHC-type profile. 116 130 IPR001878 GO:0003676|GO:0008270
Accr2g00345 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Accr2g00345 276 Gene3D - 1 115 IPR012677 -
Accr2g00345 276 Pfam Zinc knuckle 116 130 IPR001878 GO:0003676|GO:0008270
Accr2g00345 276 SUPERFAMILY RNA-binding domain, RBD 4 110 IPR035979 GO:0003676
Accr2g00345 276 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 4 268 - -
Accr2g00345 276 Gene3D - 116 152 - -
Accr2g00345 276 SMART c2hcfinal6 115 131 IPR001878 GO:0003676|GO:0008270
Accr2g00345 276 SUPERFAMILY Retrovirus zinc finger-like domains 97 136 IPR036875 GO:0003676|GO:0008270
Accr2g00345 276 FunFam glycine-rich RNA-binding protein RZ1C 1 111 - -
Accr2g00345 276 SMART rrm1_1 8 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g00345 Accr-Chr2 8172537 8177186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g00345 9 88 C2H2 Transcription Factor Family AT2G19380 38.750 4.92e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g00345 - - gmx:100809519 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g00345 2 8172537 8177186 Accr2g00345 2 8172537 8177186 ECH