Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g00334 ATGCTTCCTTCTATTACCCGCATTCTCTTCTTATGCATCTTCTTGTGTTCTTTCTCTCCTTCCATTAAAGCTTCCTTCAATCTCTCCTTGCCCCACCAGCATCCTTACCCTGAAGCTGTGGTTCATGAAGTTCACAGGAGAGTCAATGTATCTCTTTCCCGGCGGGAACTACTCGCCGGCTCCGGAAAGGACATCAGTAATGGCTGTCTCACCGGAAATCCAGTGGACGACTGCTGGCGGTGCGACCCAAACTGGGCGGCGAACCGGCAGAGGCTAGCGGACTGCGGCATTGGGTTCGGCCACGACGCCATGGGTGGAAAAGGCGGTCTGATCTACGTCGTCACAGACTCATCCGACAACGACCCGGCGAATCCAACTCCGGGAACTCTTCGTTTCGGAGTGATCCAAGAGGAGCCCCTCTGGATCATCTTCTCCAGCAGCATGACCATAACCCTAAGACACGAACTCATCTTCAACAGCTTCAAAACCGTGGACGGCCGCGGCGCCAATGTCGAGATCACCGGCCACGGCTGCCTGACACTCCAGTACGTTTCCAACATCATCATCCACAACGTCCACATCCACCACTGTAAACCGTCCGGCAACACCAACATCCGCTCAAGCCCAACACACGTCGGTTTCAGAGGCATATCGGACGGCGACGGAATCTCAATTTTCTCAGCCCGTAAGATCTGGATCGACCATTGCTCACTATCGTACTGCACAGACGGACTAATCGATGCGATAATGGGATCGACGGGGATAACGATATCGAACAACCATTTTGCGCACCACAACGAAGTGATGCTTTTAGGGCACAACGATAAGAACTTACCGGACCGGGGAATGCAGGTGACGATAGCGTTTAACCATTTCGGAGAAGGATTGGTTCAGAGAATGCCAAGATGTAGATTGGGGTATATACATGTCGTGAACAATGATTTTACGCAGTGGCAGATGTATGCCATCGGCGGCAGTGCGAACCCTACGATCAACAGCCAGGGTAACCGTTACACTGCACCGCCTAGTCCTGATTCTAAAGAGGTGACGAAGCGGGTGGACACAGACGAAGGGGAGTGGGCGGATTGGAACTGGAGGACGGAGGGTGACGTCATGGTCAACGGTGCCTTCTTCGTGCCGTCCGGTGCCGGCCTTAGCGCTCAGTACGCCAGAGCCTCCAGCGTCGACCCCAAGTCCGCCGTCCAGATCGACCAGCTCACCCTCAACTCCGGCGTCTTCGGCGATCCCAGGGATAATGGAGATCTGTTTCCCGGGTTCAGCGGCGGTGGGACAGTGACTGGAGCCACCAGCACCGGCAACGTGGGGTCCGGCGGCGGAGGTGGCGATGGTGACTTCTTTGGAATGATATTCAGGGGTAGTAGCAGCGAAGCAGCACCACCCTTACTCTCCATTGTTTCATTGTTTTTGTCTTTTCTCATTATTTCCATTTTGTACGCTTTCACCAACCATCATGCCCTCCTATTCTCTTCCATACTTTGA 1500 0.5393 MLPSITRILFLCIFLCSFSPSIKASFNLSLPHQHPYPEAVVHEVHRRVNVSLSRRELLAGSGKDISNGCLTGNPVDDCWRCDPNWAANRQRLADCGIGFGHDAMGGKGGLIYVVTDSSDNDPANPTPGTLRFGVIQEEPLWIIFSSSMTITLRHELIFNSFKTVDGRGANVEITGHGCLTLQYVSNIIIHNVHIHHCKPSGNTNIRSSPTHVGFRGISDGDGISIFSARKIWIDHCSLSYCTDGLIDAIMGSTGITISNNHFAHHNEVMLLGHNDKNLPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWQMYAIGGSANPTINSQGNRYTAPPSPDSKEVTKRVDTDEGEWADWNWRTEGDVMVNGAFFVPSGAGLSAQYARASSVDPKSAVQIDQLTLNSGVFGDPRDNGDLFPGFSGGGTVTGATSTGNVGSGGGGGDGDFFGMIFRGSSSEAAPPLLSIVSLFLSFLIISILYAFTNHHALLFSSIL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g00334 499 SUPERFAMILY Pectin lyase-like 66 403 IPR011050 -
Accr2g00334 499 MobiDBLite consensus disorder prediction 332 355 - -
Accr2g00334 499 Gene3D - 72 414 IPR012334 -
Accr2g00334 499 PRINTS Pollen allergen Amb family signature 155 171 IPR018082 -
Accr2g00334 499 PRINTS Pollen allergen Amb family signature 392 415 IPR018082 -
Accr2g00334 499 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
Accr2g00334 499 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Accr2g00334 499 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Accr2g00334 499 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Accr2g00334 499 PRINTS Pollen allergen Amb family signature 219 240 IPR018082 -
Accr2g00334 499 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Accr2g00334 499 SMART amb_all 147 344 IPR002022 -
Accr2g00334 499 FunFam Pectate lyase 72 414 - -
Accr2g00334 499 PANTHER PECTATE LYASE 18-RELATED 33 413 IPR045032 GO:0030570
Accr2g00334 499 Pfam Pectate lyase 155 336 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g00334 Accr-Chr2 7908607 7914806 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g00334 21 419 Polysaccharide Lyase AT3G54920 68.460 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g00334 K01728 - gmx:100808438 746.503