LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr2g00313	ATGAACTGTCTTCGGCTTCTTCCCTTATCCTCTGGTTTGCCTTTCCAAAGCTTTAGAAGCCACCATAGGAATCCTCTTTGCTCTGCCAATTCATTGGGAATGTCCAATACTAGTGATCCAAATCGAAGTATAGCGGTGAAGTCAGCTTCTGGCTCCATGGCCAGTGCGGGGACGGATAGTGCTGATGTTAAGGAAGAGGAAAAATCTGAGACATATAGTCATAATATGACTGAAGCCATGGGTGCTGTTTTGACTTACAGGCACGAACTAGGGATAAACTACAACTTTATTCGTCCAGACTTAATTGTAGGATCATGCCTGCAGACTCCTGAAGATGTTGACAAGCTTCGTGCAGTAGGAGTGAAAACTATATTTTGCTTGCAACAAGACCCAGATCTAGAATACTTTGGTGTTGATATCAAGGCCATTCAAGAATATGCTGCGTCTTGCAATGACATTCAACACTTGCGGGCTGAGATAAGGGACTTTGATGCATTTGACTTAAGGATGAGGCTTCCGGCTGTAGTTAGCAAATTGTACAAGGCCATAAATCGCAATGGGGGTGTGACATATATACATTGCACTGCTGGACTTGGAAGAGCGCCAGCTGTTGCGTTGGCTTATATGTTTTGGGTTCAGGGTTATAAACTTAATGAGGCTTATAGATTGCTTCTGAGCAAAAGATCATGCTTCCCAAAGTTGGATGCAATAAAAAGTGCAACAGCTGATATTCTTACAGGCTTCAGAAAAAAGCGTGTCACGTTGACATGGGGAGGCAACAATTGCTCCACAGTCGAAATTTCTGGACTTGATATTGGATGGGGCCAGAGAATACCCCTGCAGTATGATGAGAAACAGGGTCTGTGGGTTCTCATGAGGGAATTACCTGTAGGATACTACGAGTACAAGTACATTGTTGATGGGGAATGGATTTGCAATCAGTATGAGCTTGTGGCCTCTCCCAACAAAGATGGCCATGTCAATAATTATCTGCAAGTCATTGACGATGTAGACGTTGCCGATGCCTCCTTAAGGAAGAGGTTGATGGGTGATGATCCTGATCTCACAAAGGATGAACGGCTGAGAACAAGACAGTTTCTTGAAGCTCTTCCTGATGAAGAAGCATGA	1128	0.4388	MNCLRLLPLSSGLPFQSFRSHHRNPLCSANSLGMSNTSDPNRSIAVKSASGSMASAGTDSADVKEEEKSETYSHNMTEAMGAVLTYRHELGINYNFIRPDLIVGSCLQTPEDVDKLRAVGVKTIFCLQQDPDLEYFGVDIKAIQEYAASCNDIQHLRAEIRDFDAFDLRMRLPAVVSKLYKAINRNGGVTYIHCTAGLGRAPAVALAYMFWVQGYKLNEAYRLLLSKRSCFPKLDAIKSATADILTGFRKKRVTLTWGGNNCSTVEISGLDIGWGQRIPLQYDEKQGLWVLMRELPVGYYEYKYIVDGEWICNQYELVASPNKDGHVNNYLQVIDDVDVADASLRKRLMGDDPDLTKDERLRTRQFLEALPDEEA	375

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr2g00313	375	Pfam	Dual specificity phosphatase, catalytic domain	146	231	IPR000340	GO:0008138\|GO:0016311
	Accr2g00313	375	SMART	dsp_5	93	243	IPR020422	GO:0006470\|GO:0008138
	Accr2g00313	375	Pfam	Glycogen recognition site of AMP-activated protein kinase	253	336	IPR032640	-
	Accr2g00313	375	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	90	235	IPR029021	-
	Accr2g00313	375	MobiDBLite	consensus disorder prediction	47	74	-	-
	Accr2g00313	375	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	93	250	IPR020422	GO:0006470\|GO:0008138
	Accr2g00313	375	PANTHER	DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN	26	373	-	-
	Accr2g00313	375	FunFam	Phosphoglucan phosphatase DSP4, chloroplastic	248	338	-	-
	Accr2g00313	375	FunFam	Phosphoglucan phosphatase DSP4, chloroplastic	86	267	-	-
	Accr2g00313	375	SUPERFAMILY	E set domains	251	333	IPR014756	-
	Accr2g00313	375	CDD	E_set_AMPKbeta_like_N	253	333	-	-
	Accr2g00313	375	Gene3D	Protein tyrosine phosphatase superfamily	86	366	IPR029021	-
	Accr2g00313	375	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	170	228	IPR000387	GO:0016311\|GO:0016791
	Accr2g00313	375	Gene3D	Immunoglobulins	248	338	IPR013783	-
	Accr2g00313	375	CDD	DSP_laforin-like	92	239	IPR045204	GO:0019203

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr2g00313	Accr-Chr2	7448931	7461922	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr2g00313	92	375	Protein tyrosine phosphatase (PTP) family	AT3G52180	69.718	3.19e-151	426

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr2g00313	-		-	zju:107413253	597.045