Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g00278 ATGATATCTTCTGGTGTTAACTTGGTGATGACCGTGATTGGATTTGCGGTGAGCACTATGTTCATCGTTTTCGTTTGCACTAGACTCATCTGTGCTCGAATTCAATTAAATGCTTCTCGCCGATCCCTCCTTGTTGCTTCCAGATCCAATCTCAGTATGCTGGAGCGGGGATCTCAGGGTCTTGAATCCAAAGCAGTAGCGAACTTTCCGACGAAGAAGTACAGTGATGGATGCTTTGCTGCTGCAGAAAATTCTCAATGCACAGTTTGTCTCTCGGATTACCAAGGTGAGGATGTACTGCGCATCCTCCCGTATTGTGGACACTTCTTCCATGCAATCTGCATAGACCTATGGCTGCAGCAACATTCGACATGCCCGGTTTGTCGAATCTCATTAAGCAAATCATCATCAGAGAGAAAACACATAATGCCGCCAATGTTCAGTGCCATTGTTCAATCTAATTTCGGCATGGAATCTATTGATCACTGCATGATGATGGCTAATAATTCGTCAAGAAACCCTGACATTCAAGAGGATCATTATGCCACAGCTGAAGGTCGTGGAATGGTTACTTTAGAGAATGTCATCAATTTAAGGGATGCTGATCAGTCCATGAAAGATGCAGGAAAGAAGCATTTAGAGAGCCCATCAATCACCCCACTGAGCTAA 669 0.4425 MISSGVNLVMTVIGFAVSTMFIVFVCTRLICARIQLNASRRSLLVASRSNLSMLERGSQGLESKAVANFPTKKYSDGCFAAAENSQCTVCLSDYQGEDVLRILPYCGHFFHAICIDLWLQQHSTCPVCRISLSKSSSERKHIMPPMFSAIVQSNFGMESIDHCMMMANNSSRNPDIQEDHYATAEGRGMVTLENVINLRDADQSMKDAGKKHLESPSITPLS 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g00278 222 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Accr2g00278 222 Pfam Ring finger domain 86 129 IPR001841 -
Accr2g00278 222 SUPERFAMILY RING/U-box 81 135 - -
Accr2g00278 222 CDD RING-H2_EL5-like 86 129 - -
Accr2g00278 222 SMART ring_2 87 128 IPR001841 -
Accr2g00278 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 135 IPR013083 -
Accr2g00278 222 PANTHER OS11G0150450 PROTEIN 1 175 - -
Accr2g00278 222 FunFam E3 ubiquitin-protein ligase ATL6 49 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g00278 Accr-Chr2 7004711 7006553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g00278 13 185 C3H Transcription Factor Family AT4G10150 33.520 9.76e-22 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g00278 - - pcin:129309455 320.857