Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g00239 ATGTCAAAAGAGGTTGCGAAAGATGATTACATCACCAATGAATACAAAAGAAATGAATCATTCAATACAAGGAAGGCCAATATCATGAAAAAAGTAAGTGAACTAAGCATCCTTTGCGGTGTTGAGGCTGGAGCAATAATTTTCAATGGTGATCCTTCTAATCCTACACCAGAGGTTTGGCCGGACCATGAAGGTGTCCAGCAACTGATCGAGAGGTGCCATGCTAGGCCTGTCCCGCGAAGGAACTTGACCATAGAGGAACCAATACAACAAAGGATCAACATAGCAAGAGAACTTCTAATGAGAAAACGGCAAGAAAATGATGTAGAAGAGATTTCCCAACAAATGATCCAATGTTTAGCAGGGAAAGCAATGCCCAACCCTACAAATTGGAATGATATGAAGATGTTAGTTGAGCAGACTTTGAAGAACAATGCCAACATTAAGTAA 450 0.4044 MSKEVAKDDYITNEYKRNESFNTRKANIMKKVSELSILCGVEAGAIIFNGDPSNPTPEVWPDHEGVQQLIERCHARPVPRRNLTIEEPIQQRINIARELLMRKRQENDVEEISQQMIQCLAGKAMPNPTNWNDMKMLVEQTLKNNANIK 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g00239 149 SUPERFAMILY SRF-like 9 93 IPR036879 GO:0003677|GO:0046983
Accr2g00239 149 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Accr2g00239 149 PANTHER MADS BOX PROTEIN 7 131 - -
Accr2g00239 149 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 49 IPR002100 GO:0003677|GO:0046983
Accr2g00239 149 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Accr2g00239 149 CDD MADS_SRF_like 7 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Accr2g00239 149 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g00239 Accr-Chr2 6435074 6435523 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g00239 1 144 Type I MADS-box Gene Family AT5G48670 36.667 3.18e-20 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Accr2g00239 SRF-TF 1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g00239 - - pcin:129319512 166.007