Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g00171 ATGAAGAGAGAAAGATCAGATGATCACAGCATCGCCATGGCCAACTGCTTGATGCTGCTTTCCGAGGCCGCGGCTTCCTTCGGCTCCGTCTCCGCCACCGACCGTGTCTTCGTCTGCAAGACCTGTAACCGCCAGTTCTCGTCGTTCCAGGCACTCGGCGGCCACCGTGCCAGCCACAAGAAGCTGAGGATAATGGCCGGGGAGGATAGTAACAACAGTTACGATCTTTTTCTTCATTCTTCTTCGTCGTCGTCACCGGCTAAACCTAAAACTCATGAGTGCTCAATTTGTGGATTGGAGTTCGCCATAGGTCAGGCTTTAGGCGGTCACATGAGAAGACACAGAGCTCCAACATCTCACAATAATAATAATAGTAAGAACTCCTCGTCGTCGTCAAGCGCAGAGTTTGATTCAGATGCAAAGAAGAAGAAGACAGAGAAGAGCAAAAGGGTTCTGTTTCTGGACTTGAACTTGACGCCGCTTGAGAACGATTTGGAGATTTTACGGATAAAAACATCAACTCCTTTAGTAGTTACGCTTTAG 543 0.4862 MKRERSDDHSIAMANCLMLLSEAAASFGSVSATDRVFVCKTCNRQFSSFQALGGHRASHKKLRIMAGEDSNNSYDLFLHSSSSSSPAKPKTHECSICGLEFAIGQALGGHMRRHRAPTSHNNNNSKNSSSSSSAEFDSDAKKKKTEKSKRVLFLDLNLTPLENDLEILRIKTSTPLVVTL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g00171 180 Gene3D Classic Zinc Finger 35 114 - -
Accr2g00171 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Accr2g00171 180 Pfam C2H2-type zinc finger 36 61 - -
Accr2g00171 180 Pfam C2H2-type zinc finger 92 117 - -
Accr2g00171 180 MobiDBLite consensus disorder prediction 120 135 - -
Accr2g00171 180 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Accr2g00171 180 PANTHER ZINC FINGER PROTEIN ZAT5 7 163 - -
Accr2g00171 180 SMART c2h2final6 92 114 IPR013087 -
Accr2g00171 180 SMART c2h2final6 37 59 IPR013087 -
Accr2g00171 180 MobiDBLite consensus disorder prediction 110 142 - -
Accr2g00171 180 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Accr2g00171 180 SUPERFAMILY beta-beta-alpha zinc fingers 35 114 IPR036236 -
Accr2g00171 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g00171 Accr-Chr2 4942943 4943485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g00171 1 170 C2H2 Transcription Factor Family AT2G28710 47.126 9.66e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr2g00171 zf-C2H2_6 6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g00171 - - gmx:100781134 184.111