Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g00117 ATGGAAAACTCTTTGCCTTCTCAGTCAATTCAACTCCCTCCCGGCTTCAGATTCCACCCCACCGATGAAGAACTCATCACCCACTACCTCTCCCCCAAACTCCTCGACCCCTCCTTCTCTCCTCTCGCCGTTGCTCACGCTGATTTCAACAAGTCCGAGCCTTGGGATCTTCCCTGGAAGGCCCAAATGGGAGAGAAAGAGTGGTATTTCTTCTGCATCAGAGACCGGAAATACCCCACCGGTTTGAGAACCAACAGGGCCACCCAAGCAGGCTACTGGAAAGCCACCGGCAAGGACAAGGAGATCTTCAAAGCTAAGACTCTGATCGGCATGAAGAAAACTCTGGTTTTCTACAGAGGCAGAGCCCCCAAAGGTGGAAAAACCAACTGGGTCATGCATGAATATAGACTCCACCCTCAACATCATCATGATCTCCCCTCTAAGAATGAGTGGGTTCTGTGCAGAGTATTTCAGAAGATCGGTGGAGGGAAGAAGATGATGGAGGAGAGTGGAGCTTTGCCACCATTAATGGAGGGCTCGCCAAATCAAACAGAGTTTGGGGAGTCATCCCACGTGACCTGCTTCTCCGACCCGAATCGTCATCAAGCGGAGGATCCAATGACCCGGGACGACATAGTGGATAGCCAAGTACAGGTCCCAAATAGCTTTCAGCTGGAAAACTATGGATGGGGAGATTTGGATGGGGATATATCCTCTGTGATATATAACAGCAATGACATGATTCAGAGATCCTTTCAGAATCAACCATACTCGTCAGCTTCTGCTGGGCCCGTCGACGACGACATTGGTTGCCTCTGGAATTACTCCACTTAG 834 0.5024 MENSLPSQSIQLPPGFRFHPTDEELITHYLSPKLLDPSFSPLAVAHADFNKSEPWDLPWKAQMGEKEWYFFCIRDRKYPTGLRTNRATQAGYWKATGKDKEIFKAKTLIGMKKTLVFYRGRAPKGGKTNWVMHEYRLHPQHHHDLPSKNEWVLCRVFQKIGGGKKMMEESGALPPLMEGSPNQTEFGESSHVTCFSDPNRHQAEDPMTRDDIVDSQVQVPNSFQLENYGWGDLDGDISSVIYNSNDMIQRSFQNQPYSSASAGPVDDDIGCLWNYST 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g00117 277 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 204 - -
Accr2g00117 277 ProSiteProfiles NAC domain profile. 12 159 IPR003441 GO:0003677|GO:0006355
Accr2g00117 277 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
Accr2g00117 277 Gene3D NAC domain 21 161 IPR036093 GO:0003677|GO:0006355
Accr2g00117 277 FunFam NAC domain-containing protein 100-like 21 163 - -
Accr2g00117 277 Pfam No apical meristem (NAM) protein 13 137 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g00117 Accr-Chr2 3977798 3978815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g00117 8 275 NAC Transcription Factor Family AT5G39610 53.191 2.16e-96 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr2g00117 NAM 2.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g00117 - - pcin:129286920 348.206