Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Accr2g00108 | ATGTCGTCTGATTCTGATGCCCCCTTCCCCAATTCGTCATCTTCCACTCCGTTGCAGCTGGACGATCCCCAAATGCGAAGATTGTCTATGCTTCTCCCACTGCTTCTCAGTTTAGAACCTCATCGCCAGACGACCCCACAATTTGATACTGCTACTCACCATGATCGAATCCGGATCATCGTAGTTGACCCTTCAGCTGGAGCCATGATCGTCATCGAAGGCTCTGGAGATCTCCAATCCGTGCTTCAAGGCCTATCGGGGAAGTCTGGGGTCTTGCCGGCGTCAAAGGATTCGATTCAGGCCATGCCCAGAGTGGTGGTGACCGATGAAGGCACCGATTGTTCGATCTGCTTGGAAACTTACGAAGTCGGCGGCGAAGCAAGGGAAATGCCTTGCAAGCATAAATTCCACTCTGGGTGTATTGAGAAGTGGTTAGGGCTTCACGGGTCTTGCCCAATCTGCCGATATGCCATGCCGAAGGAGGAGGAAAACACTAGTATCGCCGTCAGCGAGGGCGAGCACGATGACGGGGAGAGGAGGGAGAGCGGTGAGGGGTTGGTATCCGTGAGTGTATGGGTGAGGTCCCTGGACGAAGAAGAAGACGACGAAGATGATGATCCAATGGAAGTGGATTCAGAGGCGGATCATGGATCCGGGGGAGGCAATAATGAATCACGAGAAGGAGCCAATAATGAATCACGAGAAGGAAATTCTGCTGGGAATGAAGACTTGTGGATGATGGATCAAGAGGCACAAGACATGGAATTCTGA | 771 | 0.5214 | MSSDSDAPFPNSSSSTPLQLDDPQMRRLSMLLPLLLSLEPHRQTTPQFDTATHHDRIRIIVVDPSAGAMIVIEGSGDLQSVLQGLSGKSGVLPASKDSIQAMPRVVVTDEGTDCSICLETYEVGGEAREMPCKHKFHSGCIEKWLGLHGSCPICRYAMPKEEENTSIAVSEGEHDDGERRESGEGLVSVSVWVRSLDEEEDDEDDDPMEVDSEADHGSGGGNNESREGANNESREGNSAGNEDLWMMDQEAQDMEF | 256 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Accr2g00108 | 256 | Pfam | Ring finger domain | 113 | 155 | IPR001841 | - | |
Accr2g00108 | 256 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Accr2g00108 | 256 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 49 | 159 | - | - | |
Accr2g00108 | 256 | MobiDBLite | consensus disorder prediction | 196 | 211 | - | - | |
Accr2g00108 | 256 | MobiDBLite | consensus disorder prediction | 223 | 238 | - | - | |
Accr2g00108 | 256 | MobiDBLite | consensus disorder prediction | 166 | 183 | - | - | |
Accr2g00108 | 256 | SUPERFAMILY | RING/U-box | 108 | 161 | - | - | |
Accr2g00108 | 256 | ProSiteProfiles | Zinc finger RING-type profile. | 114 | 155 | IPR001841 | - | |
Accr2g00108 | 256 | SMART | ring_2 | 114 | 154 | IPR001841 | - | |
Accr2g00108 | 256 | FunFam | E3 ubiquitin-protein ligase RNF181 | 83 | 161 | - | - | |
Accr2g00108 | 256 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 86 | 161 | IPR013083 | - | |
Accr2g00108 | 256 | MobiDBLite | consensus disorder prediction | 165 | 256 | - | - | |
Accr2g00108 | 256 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Accr2g00108 | Accr-Chr2 | 3875894 | 3876664 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Accr2g00108 | 26 | 159 | C3H Transcription Factor Family | AT1G26800 | 47.059 | 5.69e-36 | 125 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Accr2g00108 | - | K11982 | ming:122075836 | 159.458 |