Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g00108 ATGTCGTCTGATTCTGATGCCCCCTTCCCCAATTCGTCATCTTCCACTCCGTTGCAGCTGGACGATCCCCAAATGCGAAGATTGTCTATGCTTCTCCCACTGCTTCTCAGTTTAGAACCTCATCGCCAGACGACCCCACAATTTGATACTGCTACTCACCATGATCGAATCCGGATCATCGTAGTTGACCCTTCAGCTGGAGCCATGATCGTCATCGAAGGCTCTGGAGATCTCCAATCCGTGCTTCAAGGCCTATCGGGGAAGTCTGGGGTCTTGCCGGCGTCAAAGGATTCGATTCAGGCCATGCCCAGAGTGGTGGTGACCGATGAAGGCACCGATTGTTCGATCTGCTTGGAAACTTACGAAGTCGGCGGCGAAGCAAGGGAAATGCCTTGCAAGCATAAATTCCACTCTGGGTGTATTGAGAAGTGGTTAGGGCTTCACGGGTCTTGCCCAATCTGCCGATATGCCATGCCGAAGGAGGAGGAAAACACTAGTATCGCCGTCAGCGAGGGCGAGCACGATGACGGGGAGAGGAGGGAGAGCGGTGAGGGGTTGGTATCCGTGAGTGTATGGGTGAGGTCCCTGGACGAAGAAGAAGACGACGAAGATGATGATCCAATGGAAGTGGATTCAGAGGCGGATCATGGATCCGGGGGAGGCAATAATGAATCACGAGAAGGAGCCAATAATGAATCACGAGAAGGAAATTCTGCTGGGAATGAAGACTTGTGGATGATGGATCAAGAGGCACAAGACATGGAATTCTGA 771 0.5214 MSSDSDAPFPNSSSSTPLQLDDPQMRRLSMLLPLLLSLEPHRQTTPQFDTATHHDRIRIIVVDPSAGAMIVIEGSGDLQSVLQGLSGKSGVLPASKDSIQAMPRVVVTDEGTDCSICLETYEVGGEAREMPCKHKFHSGCIEKWLGLHGSCPICRYAMPKEEENTSIAVSEGEHDDGERRESGEGLVSVSVWVRSLDEEEDDEDDDPMEVDSEADHGSGGGNNESREGANNESREGNSAGNEDLWMMDQEAQDMEF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g00108 256 Pfam Ring finger domain 113 155 IPR001841 -
Accr2g00108 256 MobiDBLite consensus disorder prediction 1 22 - -
Accr2g00108 256 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 49 159 - -
Accr2g00108 256 MobiDBLite consensus disorder prediction 196 211 - -
Accr2g00108 256 MobiDBLite consensus disorder prediction 223 238 - -
Accr2g00108 256 MobiDBLite consensus disorder prediction 166 183 - -
Accr2g00108 256 SUPERFAMILY RING/U-box 108 161 - -
Accr2g00108 256 ProSiteProfiles Zinc finger RING-type profile. 114 155 IPR001841 -
Accr2g00108 256 SMART ring_2 114 154 IPR001841 -
Accr2g00108 256 FunFam E3 ubiquitin-protein ligase RNF181 83 161 - -
Accr2g00108 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 161 IPR013083 -
Accr2g00108 256 MobiDBLite consensus disorder prediction 165 256 - -
Accr2g00108 256 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g00108 Accr-Chr2 3875894 3876664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g00108 26 159 C3H Transcription Factor Family AT1G26800 47.059 5.69e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g00108 - K11982 ming:122075836 159.458