Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g00049 ATGTTAAGCATTGTTAAATTTCGCGGAATCTTTGTTGCTGGACAAGCCAATTTTCCACCATCATTAATCCCATATGCTGCATTTAGAATTTGTCACTTTGACACTGAAGGGCGTCAAAATGTATGGAGCAAACATTTGAATTCGTCACCCACCAGACTGCAAAGCAGAGTTGGAATTTTTTGGGATTTAGACAACAAACCACCCAAGTCATTGCCACCTTATGAAGCTGCCACTAAGCTGAAAGCGGCTGCATCTCACTTTGGTGTTGTTAAGCATATGGTGGCTTATGCAAATCGTCATACCTTTAGCCATGTACCTCAAAATGTTAGGGAACAAAGAAAAGAAAGGAAATTATTAAATCATTTAGAGAACAAAGGTGTGATCAAGCCAACTGAACCTTATCTTTGTCGGGTCTGTGGGAGAAAATTTTATACAAATGAGAAGCTTATCAACCATTTTAACCAAATACATGAGCGTGAGCACATAAAAAGATTGAACACGATAGAGTCAGCTAAGGGGAACAGGAGGGTGAAGTTGGTTGCTAAGTTTTCCATGAAAATGGAGAAGTATAAGAAGGCAGCAAGGAGCATTTTGACTCCCAAAGTGGGGTATGGTTTGGCGGATGAGATAAAACATGCCGGCTTTTGGGTTCGAACTGTATTGGATAAGCCACAAGCTGCAGATATTGCATTGAAAGGTCACATAGTAGATATGATGGATAATAAGCAGGTTGAGTGTGTGGTTCTTGTTTCAGACGATTGTGATTTTGTTGATGTATTAAAAGAGGCGAAGTTACGATGTCTCAAGACAGTTGTCGTTGGGGATACTAATGATGGGGCCTTGAAGAGGACTGCTGATGCTGCCTTTTCTTGGGAGGAACTTCTGATGGGGAAGGCGAAGAAGGAGGCAGTATCAGTTGTTGAAAAGTGGAAGGATCGTGATATCTTGAAAAGATTAGAGTGGGCATACAATCCAGAGGTGGAGAAAAAGAAATACAGTCCAGATGATATGGTTACTGAGGCTAATTTGGATGAAGATATTAGTGATACCTGTGATGAAGTTGATGGTGCCTATAGCTATAAAGAAGACTCAAATGCTTGGTGGGAATTGGATACTGATGATGATTTCATAAATAAACAACCAGGAAAATAA 1152 0.4019 MLSIVKFRGIFVAGQANFPPSLIPYAAFRICHFDTEGRQNVWSKHLNSSPTRLQSRVGIFWDLDNKPPKSLPPYEAATKLKAAASHFGVVKHMVAYANRHTFSHVPQNVREQRKERKLLNHLENKGVIKPTEPYLCRVCGRKFYTNEKLINHFNQIHEREHIKRLNTIESAKGNRRVKLVAKFSMKMEKYKKAARSILTPKVGYGLADEIKHAGFWVRTVLDKPQAADIALKGHIVDMMDNKQVECVVLVSDDCDFVDVLKEAKLRCLKTVVVGDTNDGALKRTADAAFSWEELLMGKAKKEAVSVVEKWKDRDILKRLEWAYNPEVEKKKYSPDDMVTEANLDEDISDTCDEVDGAYSYKEDSNAWWELDTDDDFINKQPGK 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g00049 383 ProSitePatterns Zinc finger C2H2 type domain signature. 136 157 IPR013087 -
Accr2g00049 383 SUPERFAMILY beta-beta-alpha zinc fingers 130 160 IPR036236 -
Accr2g00049 383 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 162 IPR013087 -
Accr2g00049 383 CDD PIN_LabA-like 144 275 - -
Accr2g00049 383 Gene3D - 51 295 - -
Accr2g00049 383 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 47 378 - -
Accr2g00049 383 Pfam NYN domain 208 287 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g00049 Accr-Chr2 1802094 1803245 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g00049 43 374 C2H2 Transcription Factor Family AT4G12240 61.607 2.40e-147 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr2g00049 NYN 3.3e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g00049 - - lja:Lj3g3v3326020.1 525.783