Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr23g00114 ATGGCTCAACAAGAAGACAAACGTCATGCCTCTGTTGAGGAAGGGAAGAAGAGTAAGAGGAGAAGGAATAGACCCCGGAAACCTGCAACTGAGGAGCAATTGGAACCTCAAGAGTCAAACCAGCATGGGGAGGAAGAAGGTGAAGAAGCCAGAGAGAGTGATGGGGATAAGGACTCTGCTGAGTTGCGTAAGAAAAAGAAGGATAAAAAGATGAAACGCGGTGAAGAATTGACATTAGCGGAAATGAGCGGCGATGAGGATGAGCAGGAGGGCGAACAAAGGAAGTCAAAGAATGTTGGGTCTGGAATTATGAGCACTGTGTCGTTTGACTCCCTGGGATTGTCTGAACCAACTTGTAAGGCCATTAAGGATATGGGATTCGAGCATACTACTCAGATTCAAGCGAGAGCAATCCCGCCGCTCTTGATTGGGAAAGATGTTCTTGGTGCTGCAAGGACGGGTTCTGGGAAAACTCTTGCTTTTCTAATACCAGCTGTGGAGCTGTTGTACCATGCTCAATTCACTCCGCGAAATGGAGCTGGTGTTGTTGTCATTTGCCCTACTAGGGAGCTTGCAATACAGACGCATGCTGTAGCAAAAGAACTTCTCAAATACCACTCCCAGACTCTTGCATTGGTTATTGGTGGTTCAGCTAGAAAAGGAGAAGCTGAACGGATTGTTAAAGGGGTAAATCTACTGGTGGCAACTCCTGGTCGTCTTCTTGATCATCTTCAAAATACAAAGGGATTCATATACAAGAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAATTTTGAGGAGGAAATGAAGCAGATTATTAAAATCTTACCTAAGAATCGGCAAACAGCTTTGTTTTCAGCCACCCAAACAAAAAAGGTCGAAGATCTTGCCCGCTTGTCATTTCAGACAACTCCTATCTATGTTGATGTAGATGATGGGAGAACCAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTCTTGTTCCCTGTGCCAAGCGTTTTGTTGTTCTCTACTCCTTCTTGAAGAGATATCACTCAAAAAAAAAGATGATGCAGACACGTACTACCACCTTCTTTAACTTCTGCAAAGCAGAAAAGGGGATTTTGCTCTGCACTGATGTTGCTGCCCGTGGACTTGATATACCTGATGTGGACTGGATTGTGCAGTATGATCCTCCTGATGAACCTAAGGAATATATCCACAGGGTTGGTCGAACAGCTCGTGGGGAAGGTGGCAAAGGAAATGCTTTGCTTTTCCTGATTCCTGAAGAGTTGCAATTTCTTCGCTATCTAAAGGCAGCGAAGGTTCCTGTGAAAGAATATTTATTTGATGAAAAGAAGTTGGCAAATGTACAGTCTCACCTGGAAAAGTTGGTGGGCAACAATTATTATTTGAACAAGGCAGCTAAAGATGCTTACAGATCATATATTCTAGCATATAATTCACACTCTATGAAGGACATATTTAATGTTCATCGCCTTGATTTACAGGCTGTGGCGGCTTCATTCTGTTTTTCAAATCCACCAAAGGTGAGTTTAGGCATAGACAGCGGGGCTTCAAAGCATAGGAAGAAAATGCGTAAGGTTGAAGGGTGCAGACATGGATTCAGCGATAGCAATCCTTATGGTAACAAAATTGCTGCTGATGATAACCGCCAATTTGTGAGGCATTAG 1695 0.436 MAQQEDKRHASVEEGKKSKRRRNRPRKPATEEQLEPQESNQHGEEEGEEARESDGDKDSAELRKKKKDKKMKRGEELTLAEMSGDEDEQEGEQRKSKNVGSGIMSTVSFDSLGLSEPTCKAIKDMGFEHTTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYHAQFTPRNGAGVVVICPTRELAIQTHAVAKELLKYHSQTLALVIGGSARKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYVDVDDGRTKVTNEGLQQGYVLVPCAKRFVVLYSFLKRYHSKKKMMQTRTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYLFDEKKLANVQSHLEKLVGNNYYLNKAAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSNPPKVSLGIDSGASKHRKKMRKVEGCRHGFSDSNPYGNKIAADDNRQFVRH 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr23g00114 564 Gene3D - 320 479 IPR027417 -
Accr23g00114 564 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 259 267 IPR000629 -
Accr23g00114 564 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 107 135 IPR014014 GO:0003724
Accr23g00114 564 SMART DUF4217_3 457 520 IPR025313 -
Accr23g00114 564 PANTHER RNA HELICASE 58 461 - -
Accr23g00114 564 MobiDBLite consensus disorder prediction 25 80 - -
Accr23g00114 564 Pfam Helicase conserved C-terminal domain 357 416 IPR001650 -
Accr23g00114 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 314 IPR027417 -
Accr23g00114 564 CDD SF2_C_DEAD 328 427 - -
Accr23g00114 564 Pfam DEAD/DEAH box helicase 131 302 IPR011545 GO:0003676|GO:0005524
Accr23g00114 564 SMART ultradead3 126 331 IPR014001 -
Accr23g00114 564 CDD DEADc_DDX18 118 315 IPR044773 GO:0003724|GO:0005524
Accr23g00114 564 Gene3D - 48 317 IPR027417 -
Accr23g00114 564 MobiDBLite consensus disorder prediction 1 102 - -
Accr23g00114 564 SMART helicmild6 342 417 IPR001650 -
Accr23g00114 564 Pfam Domain of unknown function (DUF4217) 458 518 IPR025313 -
Accr23g00114 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 458 IPR027417 -
Accr23g00114 564 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 138 313 IPR014001 -
Accr23g00114 564 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 315 466 IPR001650 -
Accr23g00114 564 MobiDBLite consensus disorder prediction 1 18 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr23g00114 108 435 Eukaryotic Initiation Factors Gene Family AT3G13920 29.640 5.69e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr23g00114 K13179 - zju:107418893 824.698