Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr23g00113 ATGGCTCAACAAGAAGACAAACGTCATGCCTCTGTTGAGGAAGGGAAGAAGAGTAAGAGGAGAAGGAATAGACCCCGGAAACCTGCAACTGAGGAGCAATTGGAACCTCAAGAGTCAAACCAGCATGGGGAGGAAGAAGGTGAAGAAGCCAGAGAGAGTGATGGGGATAAGGACTCTGCTGAGTTGCGTAAGAAAAAGAAGGATAAAAAGATGAAACGCGGTGAAGAATTGACATTAGCGGAAATGAGCGGCGATGAGGATGAGCAGGAGGGCGAACAAAGGAAGTCAAAGAATGTTGGGTCTGGAATTATGAGCACTGTGTCGTTTGACTCCCTGGGATTGTCTGAACCAACTTGTAAGGCCATTAAGGATATGGGATTCGAGCATACTACTCAGATTCAAGCGAGAGCAATCCCGCCGCTCTTGATTGGGAAAGATGTTCTTGGTGCTGCAAGGACGGGTTCTGGGAAAACTCTTGCTTTTCTAATACCAGCTGTGGAGCTGTTGTACCATGCTCAATTCACTCCGCGAAATGGAGCTGGTGTTGTTGTCATTTGCCCTACTAGGGAGCTTGCAATACAGACGCATGCTGTAGCAAAAGAACTTCTCAAATACCACTCCCAGACTCTTGCATTGGTTATTGGTGGTTCAGCTAGAAAAGGAGAAGCTGAACGGATTGTTAAAGGGGTAAATCTACTGGTGGCAACTCCTGGTCGTCTTCTTGATCATCTTCAAAATACAAAGGGATTCATATACAAGAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAATTTTGAGGAGGAAATGAAGCAGATTATTAAAATCTTACCTAAGAATCGGCAAACAGCTTTGTTTTCAGCCACCCAAACAAAAAAGGTCGAAGATCTTGCCCGCTTGTCATTTCAGACAACTCCTATCTATGTTGATGTAGATGATGGGAGAACCAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTCTTGTTCCCTGTGCCAAGCGTTTTGTTGTTCTCTACTCCTTCTTGAAGAGATATCACTCAAAAAAAAAGATGATGGTCTTTTTCTCTTCATGCAACTCTGTGAAATTTCATGCAGACCTTCTCAATTACATACAGATTGATTGCTATAATATACATGGAAAACAAAAGCAGCAGACACGTACTACCACCTTCTTTAACTTCTGCAAAGCAGAAAAGGGGATTTTGCTCTGCACTGATGTTGCTGCCCGTGGACTTGATATACCTGATGTGGACTGGATTGTGCAGTATGATCCTCCTGATGAACCTAAGGAATATATCCACAGGGTTGGTCGAACAGCTCGTGGGGAAGGTGGCAAAGGAAATGCTTTGCTTTTCCTGATTCCTGAAGAGTTGCAATTTCTTCGCTATCTAAAGGCAGCGAAGGTTCCTGTGAAAGAATATTTATTTGATGAAAAGAAGTTGGCAAATGTACAGTCTCACCTGGAAAAGTTGGTGGGCAACAATTATTATTTGAACAAGGCAGCTAAAGATGCTTACAGATCATATATTCTAGCATATAATTCACACTCTATGAAGGACATATTTAATGTTCATCGCCTTGATTTACAGGCTGTGGCGGCTTCATTCTGTTTTTCAAATCCACCAAAGGTGAGTTTAGGCATAGACAGCGGGGCTTCAAAGCATAGGAAGAAAATGCGTAAGGTTGAAGGGTGCAGACATGGATTCAGCGATAGCAATCCTTATGGTAACAAAATTGCTGCTGATGATAACCGCCAATTTGTGAGGCATTAG 1791 0.4305 MAQQEDKRHASVEEGKKSKRRRNRPRKPATEEQLEPQESNQHGEEEGEEARESDGDKDSAELRKKKKDKKMKRGEELTLAEMSGDEDEQEGEQRKSKNVGSGIMSTVSFDSLGLSEPTCKAIKDMGFEHTTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYHAQFTPRNGAGVVVICPTRELAIQTHAVAKELLKYHSQTLALVIGGSARKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYVDVDDGRTKVTNEGLQQGYVLVPCAKRFVVLYSFLKRYHSKKKMMVFFSSCNSVKFHADLLNYIQIDCYNIHGKQKQQTRTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYLFDEKKLANVQSHLEKLVGNNYYLNKAAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSNPPKVSLGIDSGASKHRKKMRKVEGCRHGFSDSNPYGNKIAADDNRQFVRH 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr23g00113 596 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 259 267 IPR000629 -
Accr23g00113 596 Gene3D - 324 556 IPR027417 -
Accr23g00113 596 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 107 135 IPR014014 GO:0003724
Accr23g00113 596 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 498 IPR001650 -
Accr23g00113 596 Pfam Domain of unknown function (DUF4217) 490 550 IPR025313 -
Accr23g00113 596 MobiDBLite consensus disorder prediction 25 80 - -
Accr23g00113 596 FunFam RNA helicase 324 555 - -
Accr23g00113 596 Pfam Helicase conserved C-terminal domain 343 448 IPR001650 -
Accr23g00113 596 PANTHER RNA HELICASE 58 493 - -
Accr23g00113 596 SMART DUF4217_3 489 552 IPR025313 -
Accr23g00113 596 SMART helicmild6 368 449 IPR001650 -
Accr23g00113 596 CDD SF2_C_DEAD 328 459 - -
Accr23g00113 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 314 IPR027417 -
Accr23g00113 596 SMART ultradead3 126 331 IPR014001 -
Accr23g00113 596 CDD DEADc_DDX18 118 315 IPR044773 GO:0003724|GO:0005524
Accr23g00113 596 Gene3D - 52 317 IPR027417 -
Accr23g00113 596 MobiDBLite consensus disorder prediction 1 102 - -
Accr23g00113 596 Pfam DEAD/DEAH box helicase 131 302 IPR011545 GO:0003676|GO:0005524
Accr23g00113 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 463 IPR027417 -
Accr23g00113 596 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 138 313 IPR014001 -
Accr23g00113 596 MobiDBLite consensus disorder prediction 1 18 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr23g00113 108 467 Eukaryotic Initiation Factors Gene Family AT3G13920 30.748 2.15e-46 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr23g00113 K13179 - zju:107418893 882.093