LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr23g00108	ATGGAAAACCTAGAGATCTCATCAGAATGTCCACTTCCCCCTCAAAACTCAAACAAAGGCCAATCTTCAGGTAATAAGCGCCATGAGAGAAAGTACCTAGGGGTGAGACAAAGGCCTTCAGGGAGGTGGGTGGCTGAGATTAAGGAATCGTCACAGAAGCTGAGGCTGTGGCTGGGAACTTTTGACAGAGCAGAAGATGCTGCCATGGCTTATGACTGTGCTGCTACGCTTCTCAGAGGAAGAAATGCCAAGACTAACTTCCACTCTCCTTCAGGCTCAGGGATGATCGCCAATACACGCAAGGAAATTTGCAGCTTTTTGCGTAAGAATCCAAGGGCTTACCACATTCTTAAGCATGCAATCATGAAAAACCATCATGCACTTGCTTCCTCCACAGCCTTGCCTTGGAACAACCAGACCAGTAACATTTCGAGAGACGGGTTCGAGACGCTTGTTGAAGAAACCATAGTTTGCTGTTCCACTACTAGTTCTGAACAAGCTTCTTCTTCTTCCTCTTCTGGGTGCTGTGGGGTCTCATTTGGTAGTTCTAAGGTTTATTCTTCTGTGGTTGTGGATCCATCTTTCAGCGCCTCGTTTTGTGGGGAAGAAACCCTGTAA	618	0.4693	MENLEISSECPLPPQNSNKGQSSGNKRHERKYLGVRQRPSGRWVAEIKESSQKLRLWLGTFDRAEDAAMAYDCAATLLRGRNAKTNFHSPSGSGMIANTRKEICSFLRKNPRAYHILKHAIMKNHHALASSTALPWNNQTSNISRDGFETLVEETIVCCSTTSSEQASSSSSSGCCGVSFGSSKVYSSVVVDPSFSASFCGEETL	205

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr23g00108	205	PRINTS	Ethylene responsive element binding protein signature	32	43	IPR001471	GO:0003700\|GO:0006355
	Accr23g00108	205	PRINTS	Ethylene responsive element binding protein signature	54	70	IPR001471	GO:0003700\|GO:0006355
	Accr23g00108	205	Pfam	AP2 domain	31	80	IPR001471	GO:0003700\|GO:0006355
	Accr23g00108	205	CDD	AP2	31	87	IPR001471	GO:0003700\|GO:0006355
	Accr23g00108	205	MobiDBLite	consensus disorder prediction	1	34	-	-
	Accr23g00108	205	SUPERFAMILY	DNA-binding domain	31	88	IPR016177	GO:0003677
	Accr23g00108	205	ProSiteProfiles	AP2/ERF domain profile.	31	88	IPR001471	GO:0003700\|GO:0006355
	Accr23g00108	205	FunFam	ethylene-responsive transcription factor RAP2-11	30	89	-	-
	Accr23g00108	205	Gene3D	AP2/ERF domain	30	89	IPR036955	GO:0003700\|GO:0006355
	Accr23g00108	205	SMART	rav1_2	31	94	IPR001471	GO:0003700\|GO:0006355
	Accr23g00108	205	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	19	157	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr23g00108	14	100	AP2-EREBP Transcription Factor Family	AT5G19790	56.180	6.41e-27	101

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Accr23g00108		AP2	5.5e-11	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr23g00108	K09286		-	gmx:100800716	216.853