Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr23g00090 ATGGCAGATGTCACTTACCTTCGCCACCGTGAACCAGACGACGATCCTCACCTTCCTGACCAGACCCTGCCTCTTGATCCTCTTCCCTACTGGTCCCACGCCGATTTTGATTTCGACTTCTATCCTTCCGATCCTGAATTCCCCCCGCCCGATTCCCCCCTCCGCGCTCTCAACGCCTCCCGTGATGCTGGCTTGTCTCACCAATTTGAATCCGCCATCTCTGTACGAGGTGACGATAACTTCTCGGACCCTGGTTCGATTCCCTCCACCGATCTACTGGACCGCGAAAACCAGGTAAATTTCGTTATGGATCTGTTTCAGCAGCGCGTTGAGCAATCGCAGGTCATGGGTCACACCGATTTGGTCTCCGATGTCCTGGATGATTGTAATTTCGGTATTATTGAGGGTCATTGCGACGTGGGTGTTGATGCTTTGGGTATGGATTTCGGATTGGGCTTAGGGTTTGGCGTGGATAGGGATTCTTTGCCGGGTGATGACAATAGTGGGTTTATCGTTGAAAATTATGGTTCTGGCGGTGGCGGTGGAGATGGTGACCATTTTTTCGTTGGAAGGAGAGTTGCTGGATCTGAGTCCGTGGGGACACCGTCTACGGCAGGCCAAATTCGGCCTTTTGACAACTGTGTACGGCTCATGGAGTTCGGGTCAGATTCCGATGAGGAGAATGGGGCTTTGGGTGTGTGCGCGCATTCGGAAGATGAATACAATGTGCATGATGAGAACGACGATGTTGCTAGCATCCCTCTTTACTGGGATTCTTTACAATTGGATGATAACAGGGAGAATGCTGAAGATTTTGAGTGGGAAGAAGTTGATGGCCGGGTTGATGAAAGGGAAGTTTTGAGCATGCTCACCGGTGAGGATGATGCGTCCGTATCAGTTCCAGTTTCCCCAGTAAATGGGCTTGAAGAAGAAGCAAGCATGATGAGAGCGGGAGGTGTGGAAAATTTGGGTTGGCAAGTGTTGTTGAATGCCAATAATTTGGACACGAACCCTGATTTGGATCACGGTGCAGAACCTTATTTTGGTGATCATGATGACTATATTTATACTGCAGAGTACGAAATGATGTTTGGCCAATTCGCTGACAATGAGAATCCCTTGGTTGGTCGGCCTCCGGCTTCTGTGTCAGTTGTTCAGAATCTGCCATCAGTGGTTGTGACCAAACAAGATATCGAAAATAATGGCGCACTTTGTGCAGTTTGTAAGGATGAGTTCAATGTTGAGGAACAGGCAAAGAAGTTGCCATGTTCTCATTTCTACCATGGTGAATGCATTGTCCCGTGGTTGGGAATTAGGAACACTTGTCCTGTTTGTCGATATGAGCTACCTACTGACGATGCTGATTATGAGGGTAGGAGGGTGCAAAGATCTGGCCGTAGCTAA 1404 0.4886 MADVTYLRHREPDDDPHLPDQTLPLDPLPYWSHADFDFDFYPSDPEFPPPDSPLRALNASRDAGLSHQFESAISVRGDDNFSDPGSIPSTDLLDRENQVNFVMDLFQQRVEQSQVMGHTDLVSDVLDDCNFGIIEGHCDVGVDALGMDFGLGLGFGVDRDSLPGDDNSGFIVENYGSGGGGGDGDHFFVGRRVAGSESVGTPSTAGQIRPFDNCVRLMEFGSDSDEENGALGVCAHSEDEYNVHDENDDVASIPLYWDSLQLDDNRENAEDFEWEEVDGRVDEREVLSMLTGEDDASVSVPVSPVNGLEEEASMMRAGGVENLGWQVLLNANNLDTNPDLDHGAEPYFGDHDDYIYTAEYEMMFGQFADNENPLVGRPPASVSVVQNLPSVVVTKQDIENNGALCAVCKDEFNVEEQAKKLPCSHFYHGECIVPWLGIRNTCPVCRYELPTDDADYEGRRVQRSGRS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr23g00090 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 366 452 IPR013083 -
Accr23g00090 467 ProSiteProfiles Zinc finger RING-type profile. 405 446 IPR001841 -
Accr23g00090 467 SMART ring_2 405 445 IPR001841 -
Accr23g00090 467 MobiDBLite consensus disorder prediction 1 20 - -
Accr23g00090 467 MobiDBLite consensus disorder prediction 1 22 - -
Accr23g00090 467 FunFam E3 ubiquitin-protein ligase RING1-like 366 452 - -
Accr23g00090 467 Pfam Ring finger domain 405 446 IPR001841 -
Accr23g00090 467 SUPERFAMILY RING/U-box 386 452 - -
Accr23g00090 467 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 296 450 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr23g00090 1 452 C3H Transcription Factor Family AT5G60820 37.577 1.56e-63 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr23g00090 - - pcin:129307991 743.036