Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr23g00089 ATGCCTTGGACAATGGCAGATGTCACTTACCTTCGCCACCGTGAACCAGACGACGATCCTCACCTTCCTGACCAGACCCTGCCTCTTGATCCTCTTCCCTACTGGTCCCACGCCGATTTTGATTTCGACTTCTATCCTTCCGATCCTGAATTCCCCCCGCCCGATTCCCCCCTCCGCGCTCTCAACGCCTCCCGTGATGCTGGCTTGTCTCACCAATTTGAATCCGCCATCTCTGTACGAGGTGACGATAACTTCTCGGACCCTGGTTCGATTCCCTCCACCGATCTACTGGACCGCGAAAACCAGGTAAATTTCGTTATGGATCTGTTTCAGCAGCGCGTTGAGCAATCGCAGGTCATGGGTCACACCGATTTGGTCTCCGATGTCCTGGATGATTGTAATTTCGGTATTATTGAGGGTCATTGCGACGTGGGTGTTGATGCTTTGGGTATGGATTTCGGATTGGGCTTAGGGTTTGGCGTGGATAGGGATTCTTTGCCGGGTGATGACAATAGTGGGTTTATCGTTGAAAATTATGGTTCTGGCGGTGGCGGTGGAGATGGTGACCATTTTTTCGTTGGAAGGAGAGTTGCTGGATCTGAGTCCGTGGGGACACCGTCTACGGCAGGCCAAATTCGGCCTTTTGACAACTGTGTACGGCTCATGGAGTTCGGGTCAGATTCCGATGAGGAGAATGGGGCTTTGGGTGTGTGCGCGCATTCGGAAGATGAATACAATGTGCATGATGAGAACGACGATGTTGCTAGCATCCCTCTTTACTGGGATTCTTTACAATTGGATGATAACAGGGAGAATGCTGAAGATTTTGAGTGGGAAGAAGTTGATGGCCGGGTTGATGAAAGGGAAGTTTTGAGCATGCTCACCGGTGAGGATGATGCGTCCGTATCAGTTCCAGTTTCCCCAGTAAATGGGCTTGAAGAAGAAGCAAGCATGATGAGAGCGGGAGGTGTGGAAAATTTGGGTTGGCAAGTGTTGTTGAATGCCAATAATTTGGACACGAACCCTGATTTGGATCACGGTGCAGAACCTTATTTTGGTGATCATGATGACTATATTTATACTGCAGAGTACGAAATGATGTTTGGCCAATTCGCTGACAATGAGAATCCCTTGGTTGGTCGGCCTCCGGCTTCTGTGTCAGTTGTTCAGAATCTGCCATCAGTGGTTGTGACCAAACAAGATATCGAAAATAATGGCGCACTTTGTGCAGTTTGTAAGGATGAGTTCAATGTTGAGGAACAGGCAAAGAAGTTGCCATGTTCTCATTTCTACCATGGTGAATGCATTGTCCCGTGGTTGGGAATTAGGAACACTTGTCCTGTTTGTCGATATGAGCTACCTACTGACGATGCTGATTATGAGGGTAGGAGGGTGCAAAGATCTGGCCGTAGCTAA 1416 0.4887 MPWTMADVTYLRHREPDDDPHLPDQTLPLDPLPYWSHADFDFDFYPSDPEFPPPDSPLRALNASRDAGLSHQFESAISVRGDDNFSDPGSIPSTDLLDRENQVNFVMDLFQQRVEQSQVMGHTDLVSDVLDDCNFGIIEGHCDVGVDALGMDFGLGLGFGVDRDSLPGDDNSGFIVENYGSGGGGGDGDHFFVGRRVAGSESVGTPSTAGQIRPFDNCVRLMEFGSDSDEENGALGVCAHSEDEYNVHDENDDVASIPLYWDSLQLDDNRENAEDFEWEEVDGRVDEREVLSMLTGEDDASVSVPVSPVNGLEEEASMMRAGGVENLGWQVLLNANNLDTNPDLDHGAEPYFGDHDDYIYTAEYEMMFGQFADNENPLVGRPPASVSVVQNLPSVVVTKQDIENNGALCAVCKDEFNVEEQAKKLPCSHFYHGECIVPWLGIRNTCPVCRYELPTDDADYEGRRVQRSGRS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr23g00089 471 FunFam E3 ubiquitin-protein ligase RING1-like 370 456 - -
Accr23g00089 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 370 456 IPR013083 -
Accr23g00089 471 SMART ring_2 409 449 IPR001841 -
Accr23g00089 471 ProSiteProfiles Zinc finger RING-type profile. 409 450 IPR001841 -
Accr23g00089 471 Pfam Ring finger domain 409 450 IPR001841 -
Accr23g00089 471 SUPERFAMILY RING/U-box 390 456 - -
Accr23g00089 471 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 300 454 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr23g00089 5 456 C3H Transcription Factor Family AT5G60820 37.577 1.49e-63 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr23g00089 - - pcin:129307991 743.036