Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr23g00076 ATGGGGCGCGGAAGAGTGGAGCTGAAGAGGATAGAGAATAAGATCAACAGGCAAGTCACCTTCAGTAAGCGACGCTCCGGCCTTGTCAAGAAGGCCAAAGAGATCTCTGTTCTTTGCGACGCCGAGGTCGCCCTCATCGTCTTCTCCGCCAAAGGCAAGCTCTTCCACTTCTCCAGCGACCCCTGCATGGAAAGAATCTTGGAACAGTACGAGAGGTATTCCTACGCAGAGAGGCAGCTTGCTTCAAATGATCCGGAACCCAATTGTCAGGAAAACTGGACTTTACAGCACGCCAAGTTGAAGGCAAGGATAGAGGTCCTACAAAGAAATCAAAGGCATTTTATGGGGGAAGATTTAGAGGGACTAAGTCTGAAAGAGCTTCAAAATTTGGAGCATCAGCTGGAGTCATCTCTCAAACACATAAGATCTCGAAAGAATCGGCTCATGAACGAATCTATTTCAGACCTTCAGAAAAGGGATAAGGGACTGCAGGAAGAAAACAACGTACTGGCTAAGAAGATAAAGGAGAAAGAGAAGGCAGCGAGGCAGCAGCAGAATAATCAAGGGTTGGATGATTCCTCTGTTCTGTTAACACAGCAACAATTGCTGCCTTTGAATATCATCGGAGGATCAAGAGGGGAAGGCATGGATTATGGAGGGAATCTGAACGAGGCTCGTCGACCCAATAACACTATGCTCCCAGCTTGGATGCTTCGCCCTCTCCATGAATAG 732 0.4781 MGRGRVELKRIENKINRQVTFSKRRSGLVKKAKEISVLCDAEVALIVFSAKGKLFHFSSDPCMERILEQYERYSYAERQLASNDPEPNCQENWTLQHAKLKARIEVLQRNQRHFMGEDLEGLSLKELQNLEHQLESSLKHIRSRKNRLMNESISDLQKRDKGLQEENNVLAKKIKEKEKAARQQQNNQGLDDSSVLLTQQQLLPLNIIGGSRGEGMDYGGNLNEARRPNNTMLPAWMLRPLHE 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr23g00076 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Accr23g00076 243 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr23g00076 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr23g00076 243 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Accr23g00076 243 Coils Coil 124 144 - -
Accr23g00076 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 188 - -
Accr23g00076 243 Pfam K-box region 89 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr23g00076 243 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Accr23g00076 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Accr23g00076 243 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Accr23g00076 243 Coils Coil 90 110 - -
Accr23g00076 243 Coils Coil 153 187 - -
Accr23g00076 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Accr23g00076 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr23g00076 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr23g00076 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr23g00076 243 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr23g00076 1 192 MADS-box Gene Family AT1G26310 66.497 3.83e-93 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Accr23g00076 K-box 6.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr23g00076 K09264 - zju:107410106 311.997