Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr23g00021 ATGGAGGTATCGAAGCATGTGTGTAAGTTCTGCCGGAAAAGCTTCTCGTGCGGCAGATCTTTGGGCGGTCATATGAGGTCGCACGTCTCCGGCGGCAACTATAACAATAGTAATAATAATTCAGCTTCGGCGGCGGCGGAGGATTCGGTTGCAGCATCTGCAACTGGCTACGGTCTGAGAGAGAAGAGGATCAAGACTTGGAGAGTCGCCGATACCGGTGACGGCGGCGGCTCTGAAGCATCACCGAACAAGTTGTGCAAGCAGTGTGGTAAAGCGTTTCACTCTTGCAAGGCTCTGTTTGGTCACATGAAATGTCACTCCGAGAAAGGAAGAGCTTCTGTTAGTGTGGAAGATCAAGATTCATGGACTGTCACGGATAGCCAATCTGACGACAACGAAGCTCCCAGGCCAAGAACAAGAACAAGATCCAAGAGAACAAGAACTAATTGCACTTCGTCTCTGTGCTTCTCCAATCCTTCCCCTTCTGTTTCTGAAATCGAGCAAGAGCAACAAGAAGTCGCTTTGAGCCTGATCATGCTTAGCAGGGGATCTCCAGAAATGAGGTCCGAGAAGAAATCAAAAGCATCAGAGCTTTTGAGTCCAAGAAGTGGAATCGGGAAGAGCAAGACCAAGAAGCTGGATTTTAAATCTGCAATGGAGTGTTGTGAGGAAGATGATAGAGAGCAAGGGAAGAGGAATTCCAAATTCTTAGGTTCCGAATTGGACTCAAATAAGAGCTCTCACAGAAGAGGGAAATTCGAGTGTACTACTTGCAACAAGATCTTCGATTCTTACCAAGCTCTTGGCGGCCATAGAGCCGGCCACAAGAAGATCACCAGAGACTGTTTTGTTCCAATTGACGAGACCAGTGAGAATTCCATAAAACCTGATTTGTCTCAACATGAAGCAATTTCTGGTTTAGATCTTCATGAATGCTCAGTTTGCCTCAAGAGTTTTCCATCTGAGCAGGCATTGGATGAGCATAAGAGATCCCATTCAGCTGAAGCATCTGAGAGTAGAAAAGCTGAAAGAAGTAGTAGAGGTTTGATTGAGGAACCAATTGAGAAGCTTAGGGAATTGATTGATCTTAATCTTCCAGCTGATGATGCGGAAGTTGCAGAAGAGGTAGAAGACAGCAACAACAATAGCAATTCTGAGTGTTACAGATCATCATCACCCTGGTGGGCAAGAAGCATCCACAACAAGCAGGAGGTTCTAGTAGCTCCTATTCTCTAA 1236 0.4595 MEVSKHVCKFCRKSFSCGRSLGGHMRSHVSGGNYNNSNNNSASAAAEDSVAASATGYGLREKRIKTWRVADTGDGGGSEASPNKLCKQCGKAFHSCKALFGHMKCHSEKGRASVSVEDQDSWTVTDSQSDDNEAPRPRTRTRSKRTRTNCTSSLCFSNPSPSVSEIEQEQQEVALSLIMLSRGSPEMRSEKKSKASELLSPRSGIGKSKTKKLDFKSAMECCEEDDREQGKRNSKFLGSELDSNKSSHRRGKFECTTCNKIFDSYQALGGHRAGHKKITRDCFVPIDETSENSIKPDLSQHEAISGLDLHECSVCLKSFPSEQALDEHKRSHSAEASESRKAERSSRGLIEEPIEKLRELIDLNLPADDAEVAEEVEDSNNNSNSECYRSSSPWWARSIHNKQEVLVAPIL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr23g00021 411 SMART c2h2final6 253 275 IPR013087 -
Accr23g00021 411 SMART c2h2final6 310 332 IPR013087 -
Accr23g00021 411 SMART c2h2final6 6 28 IPR013087 -
Accr23g00021 411 SMART c2h2final6 84 106 IPR013087 -
Accr23g00021 411 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Accr23g00021 411 Pfam C2H2-type zinc finger 6 28 - -
Accr23g00021 411 Pfam C2H2-type zinc finger 253 277 - -
Accr23g00021 411 Pfam C2H2-type zinc finger 86 108 - -
Accr23g00021 411 Pfam C2H2-type zinc finger 310 334 - -
Accr23g00021 411 SUPERFAMILY beta-beta-alpha zinc fingers 5 32 IPR036236 -
Accr23g00021 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 253 275 IPR013087 -
Accr23g00021 411 MobiDBLite consensus disorder prediction 112 145 - -
Accr23g00021 411 ProSitePatterns Zinc finger C2H2 type domain signature. 312 332 IPR013087 -
Accr23g00021 411 SUPERFAMILY beta-beta-alpha zinc fingers 85 332 IPR036236 -
Accr23g00021 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 310 337 IPR013087 -
Accr23g00021 411 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Accr23g00021 411 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 395 - -
Accr23g00021 411 MobiDBLite consensus disorder prediction 371 391 - -
Accr23g00021 411 MobiDBLite consensus disorder prediction 326 348 - -
Accr23g00021 411 ProSitePatterns Zinc finger C2H2 type domain signature. 255 275 IPR013087 -
Accr23g00021 411 MobiDBLite consensus disorder prediction 116 130 - -
Accr23g00021 411 Gene3D Classic Zinc Finger 2 111 - -
Accr23g00021 411 MobiDBLite consensus disorder prediction 377 391 - -
Accr23g00021 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Accr23g00021 411 MobiDBLite consensus disorder prediction 184 210 - -
Accr23g00021 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Accr23g00021 411 Gene3D Classic Zinc Finger 217 341 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr23g00021 310 367 C2H2 Transcription Factor Family AT1G26610 42.373 6.90e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr23g00021 zf-C2H2_6 2.3e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr23g00021 - - pcin:129309523 445.662