Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr23g00015 ATGGGTGGTGGTGGTGGTGGTGAGAAGGAGCAAAGTACAATAACCTTGGAGATTGCGATTCAGAAGGAGCTAATGTATCGGAGGAAGGTTACTTCATCATCAATTCAAACTCTCCGAAAATCTCCATTACCAAGCCTTCTAAATTCAAGTCCATGCCTTTCAGGAACCAAGCGAAAAGAACCAAACAATCCACATGATCTCCCACTGGAATGTCAGAACCAAGATAAGTTATACTGCAAAATTTGCAAATTGTCATGCTCAGGTCCCTCCAATCTAACACAACATTTGATGGGTCGAAAGCACAAGTCAAAGCTAAAGGACCAAGACTTGGAACATATTCAGAAGAATGGAATTGGTGGGAGAAGCAATCAAATTCACTGGTGTGAACTGTGTAAAGTTTCTTGCATGACTGAAGATTTACTTAATCTGCACTATAAGGGTAAAAAACATAGGATTGAACTACAGAAGTTTGAAATGAGCAAGGAAAAAGGAGGAGAGACAACTAGTCAGAGAAAATGGTGTGAGCTATGCAAAATATGGTGCATTGATATGTGTGCTTACAAGCAGCATCTTGAAGGCAAAAAGCACCTTCTCCAAATGCATATTATGGAGAAAAACTAG 621 0.3994 MGGGGGGEKEQSTITLEIAIQKELMYRRKVTSSSIQTLRKSPLPSLLNSSPCLSGTKRKEPNNPHDLPLECQNQDKLYCKICKLSCSGPSNLTQHLMGRKHKSKLKDQDLEHIQKNGIGGRSNQIHWCELCKVSCMTEDLLNLHYKGKKHRIELQKFEMSKEKGGETTSQRKWCELCKIWCIDMCAYKQHLEGKKHLLQMHIMEKN 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr23g00015 206 SMART c2h2final6 172 196 IPR013087 -
Accr23g00015 206 SMART c2h2final6 126 150 IPR013087 -
Accr23g00015 206 SMART c2h2final6 77 101 IPR013087 -
Accr23g00015 206 SUPERFAMILY beta-beta-alpha zinc fingers 158 200 IPR036236 -
Accr23g00015 206 SUPERFAMILY beta-beta-alpha zinc fingers 121 159 IPR036236 -
Accr23g00015 206 PANTHER ZINC FINGER RNA-BINDING PROTEIN 66 156 - -
Accr23g00015 206 Pfam Zinc-finger of C2H2 type 77 101 - -
Accr23g00015 206 Pfam Zinc-finger of C2H2 type 173 196 - -
Accr23g00015 206 Pfam Zinc-finger of C2H2 type 127 150 - -
Accr23g00015 206 Gene3D Classic Zinc Finger 154 201 - -
Accr23g00015 206 Gene3D Classic Zinc Finger 114 153 - -
Accr23g00015 206 SUPERFAMILY beta-beta-alpha zinc fingers 74 111 IPR036236 -
Accr23g00015 206 Gene3D Classic Zinc Finger 68 113 - -
Accr23g00015 206 SMART ZnF_U1_5 123 157 IPR003604 GO:0003676|GO:0008270
Accr23g00015 206 SMART ZnF_U1_5 74 108 IPR003604 GO:0003676|GO:0008270
Accr23g00015 206 SMART ZnF_U1_5 169 203 IPR003604 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr23g00015 65 163 C2H2 Transcription Factor Family AT2G19380 26.667 1.28e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr23g00015 zf-met 2.9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr23g00015 - - aip:107619886 183.341