Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr23g00005 ATGGCGGATGAGGAATCGGCTTCGTCTCCTGTAGTGTTGAGCATGGAGGTTCTTGACGATGTGGAGGACTACGATTTGGTATATGAACCAGAGGATTTGACGAGGCAAACATACCTTCATGTTTATGAACTTGTACAGAATGGCAATGCGGCATTTCGGAATAACCACGTGGAAGAGGCCATCAACTTTTACTCTAGAGCAAATAGCATCAGGACTGGTGATCCTGTTATCCTCAGCAACCGAAGTGCTGCATACATCAGGATTAGCCAATTCTTAAAACACAGACCTCCATCAGCTTCAGAATATAGTCCGTTGAGTGGGCTGGATCCTACAACACATGCTGAACTTGGTTTGAAGGACGCTGAGAAGCTTGTCAACATCCGAAGTGGTTCAGTAAAATCATATCTTTTAAAGGCCAATGCTCTTTTTCTGTTGGAGAAGTATGAGATGGCTCGTGATGTTATTCTTTCAGGTCTTCAGGTTGATCCATATAGTAATTCTCTCCGGGTGTCTCTTTCAAACCTGCAAAGAGCACTGGCTAGTTTGGCAAGGATGGGTACACATGGACAGCCAGAGCGCACTGATGACTTTGATTGCACTCTTTGCCTCAAGTTACTTTATGAACCTGTTACAACCCCCTGTGGACATTCTTTTTGCCAATCATGTCTATTCCAGTCAATAGACCGAGGCAACAGGTGCCCATTGTGCAGGACAGTTCTGTTTATTAGTTCTAGAACGTGTTCTGTCAGTGTAACGTTGAAAAACATTATACAAAAGAACTTTCCGGAGGAATATGCTGAAAGGAAGCAAGAGAATGACAGTTTGACCAACTTGGGCTTAGATTTTATCCCTCTTTTTGTCATGGATGTTGTCATTCCTTGTCAAAAGTTCCCACTCCATATATTTGAACCCCGTTATAGACTGATGGTAAGAAGAATAATGGAAGGAAATCGTCGAATGGGAATGGTTATAATCGATTCTGAAACAGATTCCCTAGCTGAGTTTGCCTGTGAAGTGGAAATTACTGAGTGTGAACCACTTCCAGATGGACGTTTCTATATAGAGATTGAAAGTCGTAGGAGATTTCGCATAATCCGATCATGGGATCAAGATGGGTATCGTGTTGCAGAGGTTGAATGGATTCAGGATGTCATGCCATTGGAAGGTACAAGAGAGAGAGAAGATTTGCTGGAAATAACAAATAATGCAGCAGAAAGTGCTCGATCGTGGATCAGGAGGGCCAAAGAAGCAGCAGGACAAGATCAAAGAAGACTTGAGAGACTGTTGAATGTTGAAGTGATGATGCCCCCGCTACAAGATCCTGAGCGCTTCAGTTTCTGGCTTGCTACCTTGTCAAACCGGAGGCCCTCAGAAAAACTGGATCTTTTGCGATTGAGCGATACCAAAGAGAGGATCAGGCGTGGTTTGATATATTTGCGAGCCGAGGAACAAGGCTGCAGCATCCAATAA 1470 0.4374 MADEESASSPVVLSMEVLDDVEDYDLVYEPEDLTRQTYLHVYELVQNGNAAFRNNHVEEAINFYSRANSIRTGDPVILSNRSAAYIRISQFLKHRPPSASEYSPLSGLDPTTHAELGLKDAEKLVNIRSGSVKSYLLKANALFLLEKYEMARDVILSGLQVDPYSNSLRVSLSNLQRALASLARMGTHGQPERTDDFDCTLCLKLLYEPVTTPCGHSFCQSCLFQSIDRGNRCPLCRTVLFISSRTCSVSVTLKNIIQKNFPEEYAERKQENDSLTNLGLDFIPLFVMDVVIPCQKFPLHIFEPRYRLMVRRIMEGNRRMGMVIIDSETDSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWIQDVMPLEGTREREDLLEITNNAAESARSWIRRAKEAAGQDQRRLERLLNVEVMMPPLQDPERFSFWLATLSNRRPSEKLDLLRLSDTKERIRRGLIYLRAEEQGCSIQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr23g00005 489 SMART lon_5 282 481 IPR003111 -
Accr23g00005 489 SUPERFAMILY TPR-like 42 179 IPR011990 GO:0005515
Accr23g00005 489 SUPERFAMILY PUA domain-like 283 479 IPR015947 -
Accr23g00005 489 Pfam Zinc finger, C3HC4 type (RING finger) 199 236 - -
Accr23g00005 489 Gene3D Tetratricopeptide repeat domain 35 189 IPR011990 GO:0005515
Accr23g00005 489 ProSiteProfiles Lon N-terminal domain profile. 280 481 IPR003111 -
Accr23g00005 489 SMART ring_2 199 236 IPR001841 -
Accr23g00005 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 278 IPR013083 -
Accr23g00005 489 ProSitePatterns Zinc finger RING-type signature. 214 223 IPR017907 -
Accr23g00005 489 SUPERFAMILY RING/U-box 193 262 - -
Accr23g00005 489 Gene3D - 282 383 IPR046336 -
Accr23g00005 489 PANTHER RING FINGER PROTEIN 127 37 481 - -
Accr23g00005 489 Pfam ATP-dependent protease La (LON) substrate-binding domain 283 479 IPR003111 -
Accr23g00005 489 ProSiteProfiles Zinc finger RING-type profile. 199 237 IPR001841 -
Accr23g00005 489 CDD RING-HC_LONFs_rpt2 196 240 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr23g00005 187 240 C3H Transcription Factor Family AT1G74990 35.088 8.96e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr23g00005 - - lja:Lj0g3v0312049.1 764.222