Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr22g00122 | ATGCATGAATGTGGCATTTGCTTCAATGTATATGCAGGTACAGAGTTTGCTCAGTTACCATGTCAACATTTTTTCTGCTTAAAATGCTTGCAGACCTTTGCTCAGATGCATGTAAAAGAAGGAACCCTCGGTAATCTTCAATGTCCCGGTTCAAAATGCGCTGTTATGATTCCACCTGCCCTATTAAAACGCTTGCTTGATGATAAAGAGTATGAGCGCCGGGAATCCTTGACGTTGGAGAAAACACTTGAATCAATGTCTGATGTTGCTTATTGCCCAAGATGTGAAACACCTTGTATAGAAGATGAAGTACAGTATGCTCAATGCTCTAAATGCTTCTTTAGCTTTTGTACCCTTTGCTGGGAGCGACGCCATGTTGCCATGCAATGCATGACCCTAGAGATGAAGCTTCAAATTTTGCAAGTTGGAAACATTAACCACATGTTTTGCTGGGCATGCCAATGCCATTATTGCTACTCTTGCAAGCAGATTGTTAGGCGCAGCTCGCAGCATTATGGACCCAAGGGTTGCAAACAGCACCCCGATGATTAG | 552 | 0.4312 | MHECGICFNVYAGTEFAQLPCQHFFCLKCLQTFAQMHVKEGTLGNLQCPGSKCAVMIPPALLKRLLDDKEYERRESLTLEKTLESMSDVAYCPRCETPCIEDEVQYAQCSKCFFSFCTLCWERRHVAMQCMTLEMKLQILQVGNINHMFCWACQCHYCYSCKQIVRRSSQHYGPKGCKQHPDD | 183 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr22g00122 | 183 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 87 | IPR013083 | - | |
| Accr22g00122 | 183 | SMART | ring_2 | 4 | 95 | IPR001841 | - | |
| Accr22g00122 | 183 | ProSitePatterns | Zinc finger RING-type signature. | 21 | 30 | IPR017907 | - | |
| Accr22g00122 | 183 | CDD | BRcat_RBR_RNF14 | 83 | 134 | - | - | |
| Accr22g00122 | 183 | SUPERFAMILY | RING/U-box | 2 | 86 | - | - | |
| Accr22g00122 | 183 | ProSiteProfiles | Zinc finger RING-type profile. | 4 | 49 | IPR001841 | - | |
| Accr22g00122 | 183 | ProSiteProfiles | TRIAD supradomain profile. | 1 | 183 | IPR044066 | - | |
| Accr22g00122 | 183 | Pfam | IBR domain, a half RING-finger domain | 73 | 130 | IPR002867 | GO:0008270 | |
| Accr22g00122 | 183 | SUPERFAMILY | RING/U-box | 72 | 135 | - | - | |
| Accr22g00122 | 183 | SMART | ibrneu5 | 72 | 130 | IPR002867 | GO:0008270 | |
| Accr22g00122 | 183 | FunFam | RBR-type E3 ubiquitin transferase | 1 | 83 | - | - | |
| Accr22g00122 | 183 | PANTHER | UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED | 1 | 175 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr22g00122 | 4 | 133 | C3H Transcription Factor Family | AT2G31510 | 26.087 | 5.57e-10 | 55.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr22g00122 | K11971 | - | gmx:100500662 | 240.736 |