Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr22g00109 ATGTATGGGGATTGTCAAGTGCTGTCAAGCATGGGAGGTAACATAGTAGTGAACTCAGAAACTCTCTTTACTTCGTCAATCCAAAACTCCAACTTTAACTTCATACCCACCATGCCTTTTCATCAACCTTTCCAACCTCCTCCCATGAAAGAAGAAGAGGGGACAATGATGATGATGAGAGGGAAGGAAGAGATAATGGAGAGTGGGTCAGGAAGCGAACAAGCTGATCAAGAAAAGTCTGGGAACGAACAAGACAGTGAACAGCCAGCCAACAAGAAGAAACGTTACCACAGGCACACTGCTCGTCAGATCCAAGAAATGGAAGCTCTATTCAAGGAATGTCCACACCCAGACGACAAGCAAAGGATGAAACTAAGCCAAGAGCTGGGTTTGAAGCCACGCCAAGTCAAGTTCTGGTTTCAAAATCGTCGAACTCAGATGAAGGCTCAACAAGATAGAGCTGATAATGTGATACTGAGAGCAGAAAATGAGAATCTGAAGAATGAGAACTATCGTCTACAAGCAGCATTGCGTAATGTGATGTGTCCTAATTGTGGTGGTCCTGCCATGATGGGCGCTGATCTCGGCATGGACGACCATCACCTTCGCCTTGAAAATGCTCGCCTCAGAGAAGAGCTAGAACGAGCGTGTTGTCTCACATCAAGATACACAGGCCGTGCAATGCAAACAATGGCATCACCACCATCACCTGCTCTAATGGCTCCTTCATTGGATTTGGACATGAACATATACTCAAGGCACTTCACCGATCCCGTCGTCTCTTGTACATCGGAGATGATTCCGGTCCCAATGTTGCCTCCTTCGGATCTTACTTCACCATTCCCAGACGGTGGTGGTGGCCTGTTATTGATGGAAGAAGACAAGCCTCTTGCTTTGGAGCTCGCCGTGTCGTCCATGAATGAACTAGTCAAGATGTGTCAGGGAAACGATCCTCTTTGGATAAGAAACAATGATAATGAGAGCGAAATTCTCAATTTTGAGGAACATGCTAGGCTCTTTCATTGGCCTCTCAACCTCAAGAACCATTCCACTGAACTTAGAAGAGAAGCTAGCCGTGACACTGCTGTGGTTATAATGAATAGTGTCACTCTTGTTGACGCCTTCCTTGATGCTATTAAGTGGATGGAATTGTTCCCCACCATTGTTTCTAGGGCAAAAACTGTTCAAGTTATATTGTCTGGTGCTTCTGGTCATGCAAGTGGGTCACTTCAACTGATGTACGCAGAATTACAGGTGATATCTCCGTTGGTGCCGACTCGTGAGACTCATTTTCTTCGTTACTGCCAACAAAATGCGGAGGAGGGGACATGGGCAATTGTTGATTTTCCTCTTGATAGCTTCCATGAAAGCTTTCACCATTCTTATCCCAGATATTGCAGGCGACCCTCCGGCTGTATTGTTCAAGACATGCCTAATGGGTACTCTAGGGTAACATGGGTGGAGCATGCAGAGGTGGAAGAGAAACCAGTGCATCAGATATTCAGTAACTATGTGTACAGTGGAATGGCCTATGGAGCACAGCGTTGGTTAGGGGTTTTGCAGAGACAATGTGAGAGGGTCGCCAGCCTCATGGCCAGGAATATTTCAGACCTTGGAGTGATACCGTCACCGGAAGCCAGAAAGAACTTAATGAAATTGGCTCAAAGAATGATAAGAACGTTCAGCCTGAACATGAGCACGTCGAGTGGGCAATCATGGACGGCGTTATCAGATTCTGCTGAAGACACTGTTAGGATTACAACAAGGAAGATTACAAACCCAGGTCAACCAAACGGGGTCATACTCAGTGCTGTCTCCACCACCTGGCTTCCTCATTCTCACTCCAAGGTCTTTGACCTCCTCAAGGACGAACGTCGCAGATCTCAGCAGTTGGATTTTCTCTCCAATGGCAACTCTTTGCATGAAGTGGCTCATATTGCAAATGGCTCGCATCCAGGAAATTGCATCTCCCTTTTACGGATTAACGTGGCTAGCAACTCATCTCAGAACGTAGAGCTCGTGGTGCAAGAGAGTTGTACCGATCAGTCCGGGAGTCTGGTGGTGTACGCCAACATTGACGTCGAGTCCATCCAGCTCGCCATGTCCGGTGAGGATCCTTCCGCCATAGCACTTCTTCCACAGGGCTTCGTCATAGTTCCGGCGACAAATACAACCTCCAATCCAACTGATTCTGCTTCGGCGGCCACTGCTGGCGGAGGAGGAGCTCCACCACTACCGCCACCTTCTTCTTCTCCTAATCTGAACCAAGCTTGTCTTCTCACAGTGGGCCTCCAAGTTCTAGCCAGCACCAGCCCTTCTGCAAAACTCAGCCTCTCCAGCGTCACCGCCATTAACAACCATCTCTGCAACACTCTCCACCAAATCGAAGCCGCTCTTTCCACCGACAATGGCACTTTCGTCGTCGAACCCATCATCACTTCTACCCCTAAGCAGTAG 2457 0.4794 MYGDCQVLSSMGGNIVVNSETLFTSSIQNSNFNFIPTMPFHQPFQPPPMKEEEGTMMMMRGKEEIMESGSGSEQADQEKSGNEQDSEQPANKKKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMKAQQDRADNVILRAENENLKNENYRLQAALRNVMCPNCGGPAMMGADLGMDDHHLRLENARLREELERACCLTSRYTGRAMQTMASPPSPALMAPSLDLDMNIYSRHFTDPVVSCTSEMIPVPMLPPSDLTSPFPDGGGGLLLMEEDKPLALELAVSSMNELVKMCQGNDPLWIRNNDNESEILNFEEHARLFHWPLNLKNHSTELRREASRDTAVVIMNSVTLVDAFLDAIKWMELFPTIVSRAKTVQVILSGASGHASGSLQLMYAELQVISPLVPTRETHFLRYCQQNAEEGTWAIVDFPLDSFHESFHHSYPRYCRRPSGCIVQDMPNGYSRVTWVEHAEVEEKPVHQIFSNYVYSGMAYGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLAQRMIRTFSLNMSTSSGQSWTALSDSAEDTVRITTRKITNPGQPNGVILSAVSTTWLPHSHSKVFDLLKDERRRSQQLDFLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQNVELVVQESCTDQSGSLVVYANIDVESIQLAMSGEDPSAIALLPQGFVIVPATNTTSNPTDSASAATAGGGGAPPLPPPSSSPNLNQACLLTVGLQVLASTSPSAKLSLSSVTAINNHLCNTLHQIEAALSTDNGTFVVEPIITSTPKQ 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr22g00109 818 Pfam Homeodomain 93 148 IPR001356 GO:0003677
Accr22g00109 818 Coils Coil 149 179 - -
Accr22g00109 818 SMART START_1 300 526 IPR002913 GO:0008289
Accr22g00109 818 SUPERFAMILY Bet v1-like 292 528 - -
Accr22g00109 818 Gene3D - 77 161 - -
Accr22g00109 818 MobiDBLite consensus disorder prediction 723 752 - -
Accr22g00109 818 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981|GO:0006355
Accr22g00109 818 MobiDBLite consensus disorder prediction 78 92 - -
Accr22g00109 818 SUPERFAMILY Homeodomain-like 80 151 IPR009057 -
Accr22g00109 818 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677
Accr22g00109 818 ProSiteProfiles START domain profile. 291 529 IPR002913 GO:0008289
Accr22g00109 818 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 88 799 IPR042160 -
Accr22g00109 818 SMART HOX_1 91 154 IPR001356 GO:0003677
Accr22g00109 818 MobiDBLite consensus disorder prediction 65 100 - -
Accr22g00109 818 FunFam Homeobox-leucine zipper protein HDG1 80 166 - -
Accr22g00109 818 SUPERFAMILY Bet v1-like 544 784 - -
Accr22g00109 818 Pfam START domain 301 526 IPR002913 GO:0008289
Accr22g00109 818 CDD homeodomain 93 151 IPR001356 GO:0003677
Accr22g00109 818 CDD START_ArGLABRA2_like 295 525 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr22g00109 26 815 Homeobox Transcription Factor Family AT5G46880 58.393 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr22g00109 START 1.5e-38 CL0209