Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr22g00051 ATGGCTGCAAATCTCACCGGTGGCGCGATAATGACGATGTGTAGAGACGATTTCTCTTGCGGGGACCTGCAGCCTGTGCTTCAAGTGATTGACTTGAAGTTGATGCAGTCGCAGCAGCATAACAACACGGAGAGGTATAGGCTTGTGCTTTCAGATGGTTCCCATTTCCAGCAAGGAATGCTTGCTACTCCGAAGAACGAATTGGTCCGTTCTGGGCGATTGCAGAAGGGCTCTGTTGTTAAGCTGACTCAGTATGTCTGTAATGCTGTCCAAGGTCGCAAGATTATCATCATTGTCGAGCTGGATATGATCCTTGACAGATGTGATCCCATCGGTGAACCTGTTGCAGCACCAAGAGCTGTACCTGCATCATCTTCCACTGATCAGTCTGGATCTACCTCAGGGAACCCCCAGAATTTAACCAGTAATTCACCTGCAGGTGGTCAGATTGCTCGAACAAATGTGACTCGGCCATCTCTAGATCATTCACAAATCAATCGTACTGCCAATGGTGTCAGATATGGTGCTGCAAATGCCCCTCCTCCGTTGCCTAAAGCAGAGCCTAGAGCTTCCCCTACTTTACCTAAGTCAGAGCCATTTAATGGGTCCTATGGTGAACAGAACATGGGATTTCGCAATCCTCCACTAGAAACTCCAATACCCCAACAAAATGTCCTTATTCGTCCGCCACAACCTATGCATAGACAGCCTTCTCCATTCTACAATAACGGGGGACAAATTGGCAGAAATGAAGCTTTCCCAAGGATAATTCCAATAGCTGCATTGAATCCATACTCAAGCATGTGGACAATTAAGGCTAGAGTTACAGCAAAGGCAAGCCTCAGACAGTACAGCAATGCCAGAGGTGATGGCAAAGTATTTTCTTTTGATCTCCTTGATTCTGATGGTGGAGAAATTCGTGCAACTTGCTTTAATGCAGTGGCTGAACAGTTCTATCATCAAATTGAAATTGGTAAAGTATATCTGATTTCCAAGGGGAGTCTAAAGCCAGCTCAAAAAAATTTTAATCACCTTCCAAATGATCATGAACTGACTCTTGATTATACATCCATCATACAGCCATGTGATGATAACAAGTCAATTCCAATGCATCTTTTTAAATTCCGTCCTATTAGTGATGTTGAAAGCATAGAAAATTTGAGTGTTGTGGATGTGATTGGTGTCGTGTTTTCTATCAGTCCTACCACTTCAATCATGAGAAAGAATGGTACTGAAACTCATAAGAGAGCCCTCCAGTTGAAGGACATGTCTGGTTGCAGTGTTGAGTTAACCCTTTGGGGAGAGTTTTGTAATGCAGAGGGACAACAGTTGCAGAATACTTGTGACTCAGGTGCATTTCCAGTTTTGGCTGTGAAAGCTGCGAGGGTGAATGAATTCAATGGCAAGGCCCTAGGGACCTTATCCAATAGTCAGCTATTTATAGAGCCTGATCTTCCTGAGGCCTACAGGTTGAAAGAATGGTTTGCCAAGGAAGGGAGGAATGGTCCAACTGTTTCTATTTCCAGAGAATCATTCAATGTTGGTAAGACTGATATGAGGAAGACTATATCTCAGATTAAAGATGAGAAGTTAGGGACTTCAGAAAAGCCTGATTGGATTAGCATCTGTGCCAGTGTTTCATTCATTAAGGCCGACTCTTTCTGCTATACAGCCTGTCCCATCATGATAGGGGATAGGAAATGTAGCAAAAAAGTGTCCAATAATGGAGATGGAAAATGGCGGTGTGACAGGTGTGACCAGTATGTTGACGCATGTGAATATAGGTATATACTGCAACTCCAAATACAGGACCACACTGGGCTGACATGGGTTACTGCATTTCAGGAGTGTGGTGAGGAGATAATGGGCTTAACTGCCAAAGACCTATATTATATGAAATATGAAGAGCAGGATAATGAAAGATTTACACAAGTTATCCGTAAGGTTCTTTTTACTAAATACCTATTCAAGTTAAAAGTTAAGGAAGAGACTTTTGGTGATGAACAGCGTGTGAAGTCAACAGTAGTGAAAGCAGAGAAGGTGAATTTTTCATCTGAATCAAGATTCGTTTTGGATTTGATTGATAAGCTTAAAGCTGAGAAGCTGGATGGTATGAATCCTAACTCTGCAATGAGTAATGCTGGGCCGCAGAATATTGGAACTGGCTTGGCTATGCCACCAGCTTATAATCCTATAAAGAGCAATAGTAGTGCGAGTAGAGAATATGGGATGCAAGCAAATCAAGTGGGTCAGTATGAACACCAACACAGGACTTCATTTGCTTCAGCTGGGTCTTCTAGTTCATTTATGCCTTGCAGCAATTGCGGAGGATCTGGCCATAGCTCTGTGGATTGCCCAAACATTACAAGTGTACCTCGACAGTCCAGGGGAGGAGGGGCCTTTGCAAATAGGGTATCTTCAGGAGTAGGTGGCGGCGTTGCCTCTGGTGAATGCTTTAAATGTCATGAAACTGGTCACTGGGCAAGAGACTGTCCTGGTCTCAATGCAGCAGCCCCTTCAGCTTATGGAAGTAGTGTTGTTCACGGAGGACATGGGTTTATTCAAAGGCAACAGCTTGGCGGATTTTGA 2589 0.4372 MAANLTGGAIMTMCRDDFSCGDLQPVLQVIDLKLMQSQQHNNTERYRLVLSDGSHFQQGMLATPKNELVRSGRLQKGSVVKLTQYVCNAVQGRKIIIIVELDMILDRCDPIGEPVAAPRAVPASSSTDQSGSTSGNPQNLTSNSPAGGQIARTNVTRPSLDHSQINRTANGVRYGAANAPPPLPKAEPRASPTLPKSEPFNGSYGEQNMGFRNPPLETPIPQQNVLIRPPQPMHRQPSPFYNNGGQIGRNEAFPRIIPIAALNPYSSMWTIKARVTAKASLRQYSNARGDGKVFSFDLLDSDGGEIRATCFNAVAEQFYHQIEIGKVYLISKGSLKPAQKNFNHLPNDHELTLDYTSIIQPCDDNKSIPMHLFKFRPISDVESIENLSVVDVIGVVFSISPTTSIMRKNGTETHKRALQLKDMSGCSVELTLWGEFCNAEGQQLQNTCDSGAFPVLAVKAARVNEFNGKALGTLSNSQLFIEPDLPEAYRLKEWFAKEGRNGPTVSISRESFNVGKTDMRKTISQIKDEKLGTSEKPDWISICASVSFIKADSFCYTACPIMIGDRKCSKKVSNNGDGKWRCDRCDQYVDACEYRYILQLQIQDHTGLTWVTAFQECGEEIMGLTAKDLYYMKYEEQDNERFTQVIRKVLFTKYLFKLKVKEETFGDEQRVKSTVVKAEKVNFSSESRFVLDLIDKLKAEKLDGMNPNSAMSNAGPQNIGTGLAMPPAYNPIKSNSSASREYGMQANQVGQYEHQHRTSFASAGSSSSFMPCSNCGGSGHSSVDCPNITSVPRQSRGGGAFANRVSSGVGGGVASGECFKCHETGHWARDCPGLNAAAPSAYGSSVVHGGHGFIQRQQLGGF 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr22g00051 862 Pfam Replication factor-A C terminal domain 539 688 IPR013955 -
Accr22g00051 862 ProSiteProfiles Zinc finger CCHC-type profile. 772 787 IPR001878 GO:0003676|GO:0008270
Accr22g00051 862 FunFam Replication protein A subunit 4 118 - -
Accr22g00051 862 CDD RPA1_DBD_B 389 495 - -
Accr22g00051 862 CDD RPA1_DBD_A 258 360 - -
Accr22g00051 862 NCBIfam replication factor-a protein 1 (rpa1) 250 696 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Accr22g00051 862 SUPERFAMILY Retrovirus zinc finger-like domains 763 833 IPR036875 GO:0003676|GO:0008270
Accr22g00051 862 CDD RPA1_DBD_C 523 696 IPR047192 -
Accr22g00051 862 SUPERFAMILY Nucleic acid-binding proteins 1 112 IPR012340 -
Accr22g00051 862 Gene3D - 765 848 - -
Accr22g00051 862 Pfam Replication protein A OB domain 378 481 IPR031657 -
Accr22g00051 862 SUPERFAMILY Nucleic acid-binding proteins 373 500 IPR012340 -
Accr22g00051 862 Gene3D - 255 365 IPR012340 -
Accr22g00051 862 Pfam Zinc knuckle 771 787 IPR001878 GO:0003676|GO:0008270
Accr22g00051 862 Pfam Zinc knuckle 817 832 IPR001878 GO:0003676|GO:0008270
Accr22g00051 862 MobiDBLite consensus disorder prediction 116 196 - -
Accr22g00051 862 CDD RPA1N 8 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Accr22g00051 862 SUPERFAMILY Nucleic acid-binding proteins 256 365 IPR012340 -
Accr22g00051 862 Gene3D - 3 117 IPR012340 -
Accr22g00051 862 FunFam Replication protein A subunit 255 364 - -
Accr22g00051 862 SMART c2hcfinal6 817 833 IPR001878 GO:0003676|GO:0008270
Accr22g00051 862 SMART c2hcfinal6 771 787 IPR001878 GO:0003676|GO:0008270
Accr22g00051 862 FunFam Replication protein A subunit 506 697 - -
Accr22g00051 862 FunFam Replication protein A subunit 367 505 - -
Accr22g00051 862 MobiDBLite consensus disorder prediction 122 171 - -
Accr22g00051 862 SUPERFAMILY Nucleic acid-binding proteins 520 697 IPR012340 -
Accr22g00051 862 Gene3D - 506 697 IPR012340 -
Accr22g00051 862 Gene3D - 367 505 IPR012340 -
Accr22g00051 862 SUPERFAMILY Retrovirus zinc finger-like domains 809 835 IPR036875 GO:0003676|GO:0008270
Accr22g00051 862 PANTHER REPLICATION FACTOR A 1, RFA1 269 689 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Accr22g00051 862 Pfam OB-fold nucleic acid binding domain 269 358 IPR004365 GO:0003676
Accr22g00051 862 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Accr22g00051 862 ProSiteProfiles Zinc finger CCHC-type profile. 818 832 IPR001878 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr22g00051 1 813 Core DNA Replication Machinery Family AT5G45400 49.710 0.0 828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr22g00051 K07466 - qsa:O6P43_033421 1106.28