Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr22g00031 ATGGCTGCAAAACTCAGCAGTGGGGCGATAATGACGTTGTGTAGAGACGATTTATCATACGATGACCTGAAGCCTGTCCTTCAAGTGATTGACTTGAAGTTGGTGCAGTCGCAGCAGCATAACAACGTGGAGAGGTATAGGCTTGTGCTTTCAGATGGTTCCCATTATCAGCAAGGCATGCTTGCTACTCAGAAGAACGATTTGGTCCATGCGGGGCGATTGCAGAAGGGCTCTGTTGTTAAGCTGACTCAGTTCGTCTGTAATTGTGTCCAGAGTCGCAAGATTATCGTCATTATCGAGCTGGAAATGGTCCTTGACAGATGTGATCCCATTGGACAACCTGTCCCGGCGCAGAGAGCTGTTCCTGCAGCGTCTCCCACTGCACCATCTCCCACTGATCAGTCTGGAGTTACCTCAGGGAATCCCCAGTCTTTGACAAGTAACTCATCTGCAGGTGGCAAGATTGCTCGATCTAATGTGACTGGGCCATCTCTAGATCATTCACAAATCAATCTTACTGCTAATGGTGCAAGATATGGTGCTGCAAATGCCTCTTCTCCATTTCTTAAAGCAGAACCTACTTTTCCTAAATCAGAGTCATCCATTGGGTCCTATGGTGAACAGAACATGGGATTTCAGAACCCTCGACCAGAACCTCCAAGACCCCCACAAAATGTCTATGGTCGTCCACCACAGCCTATGCATAGACAAGCTTCTCCAGTCTACAATAACAGGGGGCAAATAGGTAGAAATGAAGCTTTCCCAAGGATAATTCCAATAGCTGTATTGAATCCATACTCAAGCATGTGGACAATTAGGGCCAGAGTTACAGCAAAGGCAAGCCTCAGACAGTACCACAATGCTAGAGGTGATGGCAAAGTATTTTCTTTTGATCTTCTTGATTCTGATGGTGGAGAAATTCGAGCAACTTGCTTTAATGCAGTGGCTGAACAATTCTATCATCAAATTGAAATTGGTAAAGTATATCTGATTTCCAAGGGGAGTCTAAAGCCAGCTCAAAAAAATTTTAATCACCTTCCTAATGATCAAGAACTGACCCTTGATATTACATCTACCATACAGCCATGTGATGATGACGAGTCAATTCCAATGCGTCTTTTTAAATTTCGTCCTATTAGAGATGTTGAAAGCATGGAAAATTCGAGTGTTGTGGATGTGATTGGTGTGGTATTTTCTATTAGTCCTACAACTTCAATCATGAGAAAAAATGGTACTGAAACTCATAAGAGAGCCCTCCAGTTGAAGGACATTTCTAGTTGCAGTGTTGAGTTAACCCTTTGGGGAGAGTTCTGTAATGCAGTGGGACAAAAGTTGCAGAATACTTGTGACTCAGGTGCATTTCCAGTTTTGGCTGTGAAAGCTGCCAGGGTAAATGAATTCAATGGGAAGGCCCTTGGGACCATATCCAATAGTCAGCTATTTATCGAGCCTGATCTTCCTGAGGCCCACAGGCTGAGAGAATGGTTTGACAAGGAAGGGAAGAATGCTCCAACTGTTTCTATTTCCAGAGAATCATTCAATGTTGGTAAGACTGATATGAGGAAGACTATATCTCAGATTAAAGATGAGAAGTTAGGAACTTCTGAGAAGCCTGACTGGATTAGCATCTGTGCAAGTGTTTCATTCATTAAGTCTGATTCTTTCTGCTATACAGCCTGTCCCATCATGATAGGGGATAGGAAATGCAGCAAAAAAGTGTCCAATAATGGAGATGGCAAATGGCGGTGTGATAGATGTGACCAGTATGTTGATGCATGTGAATATAGGTATATACTGCAACTCCAAATACAGGACCACACTGGGCTAACATGGGCTACTGCATTTCAGGAGGGTGGTGAGGAGATAATGGGCCTACCTGCCAAAGATCTTTATTATATGAAATATGAAGAGCAGGATGATGAAAGATTTGCACAAGTTATCCGTAAGGTTCTTTTTACTAAATACCTATTTAAGTTAAAAGTTAAGGAAGAGACTTTTGGTGATGAACAGCGTGTGAAGTCAACAGTCGTGAAAGCAGAGAAGGTGAACTTTTCATCTGAATCAAGATTTGTTTTGGATTTGATTGATAAACTTAAAGCTGAGAAGGTGGAAGGTATGGATCCTAACTCTGTAATTAGTAATGTCGGACCGCCGAATGCTGGAACTGGCCTGGCTAATACTATAAAGAGCAATAGTGGTGCGAGTAGAGAATATGGGATGCCAGCAAATGAAGTGGGTCAGTATGAAGAGCAATATAGAAGTTCATTTGCTTCAGATGGACCTTCTAGCACATTTATGCCTTGCAGCAATTGTGGAGGCTCTGGCCATAGCTCTATGCATTGCCCAAATGTTACAAGTGTAACTCGACAGTCCCTGGGAGGAGGGGCCTTTGCAAATAGGGTATCTTCAGGGTTAGGTGGTGGTGTTGCCTCTGATGAATGCTTTAAATGTCATCAAACTGGTCACTGGGCAAGAGACTGTCCTGGTGTTAATGCTGCAGCTCCTTCTGCTTATGGAAGTAGTGTTGTTCATGGAGGCAATGGGTTTGTTCAAAGGCAACAGCGTGGAGGATTTTGA 2577 0.4323 MAAKLSSGAIMTLCRDDLSYDDLKPVLQVIDLKLVQSQQHNNVERYRLVLSDGSHYQQGMLATQKNDLVHAGRLQKGSVVKLTQFVCNCVQSRKIIVIIELEMVLDRCDPIGQPVPAQRAVPAASPTAPSPTDQSGVTSGNPQSLTSNSSAGGKIARSNVTGPSLDHSQINLTANGARYGAANASSPFLKAEPTFPKSESSIGSYGEQNMGFQNPRPEPPRPPQNVYGRPPQPMHRQASPVYNNRGQIGRNEAFPRIIPIAVLNPYSSMWTIRARVTAKASLRQYHNARGDGKVFSFDLLDSDGGEIRATCFNAVAEQFYHQIEIGKVYLISKGSLKPAQKNFNHLPNDQELTLDITSTIQPCDDDESIPMRLFKFRPIRDVESMENSSVVDVIGVVFSISPTTSIMRKNGTETHKRALQLKDISSCSVELTLWGEFCNAVGQKLQNTCDSGAFPVLAVKAARVNEFNGKALGTISNSQLFIEPDLPEAHRLREWFDKEGKNAPTVSISRESFNVGKTDMRKTISQIKDEKLGTSEKPDWISICASVSFIKSDSFCYTACPIMIGDRKCSKKVSNNGDGKWRCDRCDQYVDACEYRYILQLQIQDHTGLTWATAFQEGGEEIMGLPAKDLYYMKYEEQDDERFAQVIRKVLFTKYLFKLKVKEETFGDEQRVKSTVVKAEKVNFSSESRFVLDLIDKLKAEKVEGMDPNSVISNVGPPNAGTGLANTIKSNSGASREYGMPANEVGQYEEQYRSSFASDGPSSTFMPCSNCGGSGHSSMHCPNVTSVTRQSLGGGAFANRVSSGLGGGVASDECFKCHQTGHWARDCPGVNAAAPSAYGSSVVHGGNGFVQRQQRGGF 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr22g00031 858 Gene3D - 368 507 IPR012340 -
Accr22g00031 858 Pfam Replication protein A OB domain 379 482 IPR031657 -
Accr22g00031 858 SMART c2hcfinal6 767 783 IPR001878 GO:0003676|GO:0008270
Accr22g00031 858 SMART c2hcfinal6 813 829 IPR001878 GO:0003676|GO:0008270
Accr22g00031 858 FunFam Replication protein A subunit 256 365 - -
Accr22g00031 858 MobiDBLite consensus disorder prediction 117 168 - -
Accr22g00031 858 SUPERFAMILY Nucleic acid-binding proteins 1 112 IPR012340 -
Accr22g00031 858 SUPERFAMILY Retrovirus zinc finger-like domains 805 831 IPR036875 GO:0003676|GO:0008270
Accr22g00031 858 SUPERFAMILY Nucleic acid-binding proteins 521 698 IPR012340 -
Accr22g00031 858 NCBIfam replication factor-a protein 1 (rpa1) 212 697 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Accr22g00031 858 MobiDBLite consensus disorder prediction 188 224 - -
Accr22g00031 858 FunFam Replication protein A subunit 507 698 - -
Accr22g00031 858 Pfam OB-fold nucleic acid binding domain 270 356 IPR004365 GO:0003676
Accr22g00031 858 CDD RPA1N 8 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Accr22g00031 858 ProSiteProfiles Zinc finger CCHC-type profile. 768 783 IPR001878 GO:0003676|GO:0008270
Accr22g00031 858 FunFam Replication protein A subunit 368 506 - -
Accr22g00031 858 SUPERFAMILY Nucleic acid-binding proteins 257 369 IPR012340 -
Accr22g00031 858 Gene3D - 3 118 IPR012340 -
Accr22g00031 858 PANTHER REPLICATION FACTOR A 1, RFA1 270 686 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Accr22g00031 858 FunFam Replication protein A subunit 4 118 - -
Accr22g00031 858 MobiDBLite consensus disorder prediction 125 168 - -
Accr22g00031 858 Gene3D - 763 844 - -
Accr22g00031 858 Gene3D - 256 366 IPR012340 -
Accr22g00031 858 CDD RPA1_DBD_B 390 497 - -
Accr22g00031 858 Gene3D - 508 698 IPR012340 -
Accr22g00031 858 MobiDBLite consensus disorder prediction 197 211 - -
Accr22g00031 858 Pfam Replication factor-A C terminal domain 540 689 IPR013955 -
Accr22g00031 858 SUPERFAMILY Nucleic acid-binding proteins 374 503 IPR012340 -
Accr22g00031 858 CDD RPA1_DBD_C 524 697 IPR047192 -
Accr22g00031 858 Pfam Zinc knuckle 813 828 IPR001878 GO:0003676|GO:0008270
Accr22g00031 858 ProSiteProfiles Zinc finger CCHC-type profile. 814 828 IPR001878 GO:0003676|GO:0008270
Accr22g00031 858 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Accr22g00031 858 CDD RPA1_DBD_A 259 362 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr22g00031 1 809 Core DNA Replication Machinery Family AT5G45400 51.168 0.0 850
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr22g00031 K07466 - qsa:O6P43_033421 1095.88