Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr22g00009 ATGGGATCCGGTAGTAGTAAAGCCGTTGCTTCTTGCAATTCTTCGGCGACGTCGTCGTCTTCGGGTAGTTTTCTTAAGCGTCGATCTAGAGGGCACAGAGGTTTTCAGTCGTATTGTTTAGGAACAACATCTGGATCTCATGACAGTGACAATGACGAGCAGGTGTGTGATCAAAATAAAGAAAACGATAGTAATGCTACATACTCCAATGGTGATGAAACAGATGCAGATGGGATGATATCGGAGTCTTTCAGAAAGATTGAATCTGATAAAATGCCATGTATCCCTGCTAATGTCCACCTTGATGAGTGGAATCAAACAGGCATTTCCAATAGTGCATCTAGAACTGGTAGCAGTTCTGATCGTCCAGCTTCAACTCAGTCCTTGAACCCTTCAAGTCGATTCCTTTCTCGGTTTAGCCTTATTCCTGGTAATGTAAGCTTCAGACTAAGCAGAACCACTAGTTTGGGGTCATCACAGCCTTGCCCTGTTTCTTCTGCTGGTCTCTCAATATTTAACAGTGAAGATGACCTTAATCCACAGCCAGGACCTCCTGGCAGCTTGGCTAATCAGAATGAAGCTGTACAATGCAGTGACTTGCTTCCTGCGTCACAATGCTATGAAGACACTTCTATTAATTTAAGGTCTTCATCAGATTCCTATGGCAACCTGCAAAACAATTCAACAAATTCTTCTATGCAGAATATGAGTAGAGATGAAAGTGGTGTGAGAGAAGGGTTCAGTATTAACTTATTTTCTCCAAGAGTCCATGCCAGAACAGAAAATGTTGAAATGAGACAAAATGATCGCAGAAATGGAATTCGAGAACCTGTTGAACGGAATGTTCGCTTTAGTCGTACTTTGAGTGTTGGAAGACTTCGCGATAGGGTTCTTCGTCGATCAACAGTATCAGACTTCACTTTTGGCCCGCTGCAACAAGAAAGGGATGCGACGGATGCTGCTAGTCAAGATATTGGAAGACAAGCAGGGGAGAGAGAGTCAAGAGTGCTACCATCTGATAGTGACTCTACAAGTTTCCCTTCTACCTCTGGATATCCTCCATCCAACATGTCTAGCTCCTTGTTTGGCATCCAAGACTATGAGGTTGAGTCTTCACGATCAAGAGAAGCTAGGTATCGTGATCTACTGGAAAATAGATCCAATTTCCTAGAACGGAGAAGAAGAATACGGTCCCAGGTCCGTGCTCTTCAACGATTGGGCAGCCGATTTGAAAATCTGTCTGGGCATGACAGGTCATGTATTTTGTCTGGCCAACATAGAAATGGCCGTTGTACATGCCGAATTAGTAGTCGTGATGCCAATGCTAATGATGATACTGGGGCTAGAGCTAGCATATCAAGAATTGTTATGCTTGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCAGTGGTTCTATCTTCCCGCCCTTCTGTTTCTTCTATTGGCTCTGTTCCTGCACCTTATGAAGTTGTAGAATCCTTGCCTGTCAAATTATACACAAAGTTGCATAAACATCAGGAGGATGCTGCTCAATGCTACATATGCCTTGTGGAGTATGACGATGGAGACAGCATGCGAGTACTACCTTGTCATCATGAATTTCATGTAACATGCATAGACAAGTGGCTAAAGGAGATTCACAGGGTATGCCCATTATGCCGTGGGGACATCTGCGCTGCTGATTCATTGCCAGCCGGAAACTGA 1716 0.4382 MGSGSSKAVASCNSSATSSSSGSFLKRRSRGHRGFQSYCLGTTSGSHDSDNDEQVCDQNKENDSNATYSNGDETDADGMISESFRKIESDKMPCIPANVHLDEWNQTGISNSASRTGSSSDRPASTQSLNPSSRFLSRFSLIPGNVSFRLSRTTSLGSSQPCPVSSAGLSIFNSEDDLNPQPGPPGSLANQNEAVQCSDLLPASQCYEDTSINLRSSSDSYGNLQNNSTNSSMQNMSRDESGVREGFSINLFSPRVHARTENVEMRQNDRRNGIREPVERNVRFSRTLSVGRLRDRVLRRSTVSDFTFGPLQQERDATDAASQDIGRQAGERESRVLPSDSDSTSFPSTSGYPPSNMSSSLFGIQDYEVESSRSREARYRDLLENRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRISSRDANANDDTGARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPYEVVESLPVKLYTKLHKHQEDAAQCYICLVEYDDGDSMRVLPCHHEFHVTCIDKWLKEIHRVCPLCRGDICAADSLPAGN 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr22g00009 571 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 480 563 IPR013083 -
Accr22g00009 571 ProSiteProfiles Zinc finger RING-type profile. 516 558 IPR001841 -
Accr22g00009 571 MobiDBLite consensus disorder prediction 108 131 - -
Accr22g00009 571 MobiDBLite consensus disorder prediction 167 191 - -
Accr22g00009 571 FunFam Putative RING zinc finger domain superfamily protein 485 563 - -
Accr22g00009 571 Pfam Ring finger domain 515 558 IPR001841 -
Accr22g00009 571 SUPERFAMILY RING/U-box 494 563 - -
Accr22g00009 571 MobiDBLite consensus disorder prediction 339 359 - -
Accr22g00009 571 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 569 - -
Accr22g00009 571 MobiDBLite consensus disorder prediction 1 77 - -
Accr22g00009 571 MobiDBLite consensus disorder prediction 215 241 - -
Accr22g00009 571 MobiDBLite consensus disorder prediction 60 76 - -
Accr22g00009 571 MobiDBLite consensus disorder prediction 1 25 - -
Accr22g00009 571 MobiDBLite consensus disorder prediction 309 359 - -
Accr22g00009 571 SMART ring_2 516 557 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr22g00009 233 565 C3H Transcription Factor Family AT5G45290 61.404 2.82e-116 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr22g00009 - - gmx:100786091 773.852