Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr21g00009 ATGGTGGAGGAGGAGGGAGTTTTGCCGGACCATCTGCGCTGTAGCCGCACCGACGGCCGGCAATGGCGGTGCCGCCGGAGGGTTATGGATAATCTGAAGCTATGTGAGATTCACTATCTACAAGGTCGTCATCGGCAGTACAAGGAGAAGGTCCCGGAGTCGCTGAAGCTTCAGAGGAAGCGAAAGAATGGGAGTAATGACAGCAAGAACGACGCTTTTGTTCTCGACAATGTTGAAATTAGGGCGCTGAACATAGGGAAGAAGGCGAACCTGATAAAGAAGAGGCCTAAATTCTGGGATTCTTCTGAAGCAGTGGATGCTCATCCTGTGAAGAAAAAGGCCTTGAAACAAGGCGGTATGCAGTTGGAGTTGATAAGGATTGTTCTGAAGAGGGAGATAGAGAAGAGGAAGAAGAAGCAACGAAAGAACAAGAAGGAGGAGGAGGAGGAGGAAGGAGGAGGAGAGCTAATTCATTACAGCGAGGGAGAGAGAGAGTTGACCAGAGAATTACCCAATGGTGTTATGGCAATCTCTTCAGCTTCAACGCCCCAAGATTACAACAATGTCAGTTCATATTGCGATGTTAAAGTGGGGATTGATCATAAAGCAATCACCCCACGTTACTTCAGGTCCAAGAATGTGGAGAAGCTTCCCGCTGGCAAGTTGCAGGTATTACCTTTAGGGCAAAACTTGAAGAAGTTTAGGAGGAAAAAGTGTCACTGGTGCCAGAAAAGCGATTCTTGGAATCTCATTAAATGTTCAAGCTGTCAAAAAGAATTCTTTTGCATGGATTGCATCAAAGAACGGTACTTTGAAACTCAAAATGAAGTTAAGATGACATGCCCAGTTTGCCGAGGAACATGCTCCTGTAAAGACTGCTTGGCAAGTCAGTGTAAAGAAAGTGAAAGTAAGGAATATTTGGCAAGCAAAGGCAGAGTTGACAGAATCTTGTGTTTCCATTATATGATCTGCATGCTTCTTCCTCTACTAAAACAAATCAGTGAAGACAATAATATTGAACTAGCAAAATCGAAAAGTAAAGAGAAAAGAACCTCTGATATTCTAATCAAGGAAGTTGAGTTTCGCTGTAATGAACAAAATTGCTGGATACCCATCAAATTGAAAGATGGCATTGCCAGTGAAAATCACCTTTTGGATGTCATTTCCAATGGCAATTCGACTGCTACTTCATCACCAGACTGCACAATTTGTAATGGTTCTGGCAATTTATCTTGTCCCCCCCCTGAGCTAGGTGGTTATGGTGATTGCCTCCTTGATTTGAGATGTGTCTTTCCCATAAGTTTGATCAGGGAAATGGAAACAAAAGCTGAAGAAATATCTTGCTGCTTTGACTTTCCTGAATCATTGGATAAAAGTTCAAGCTGTTCGCTTTGTCTCAGTTCTGATAATAAGATCGGTAGATACAAACAGTGGCAAGAAGCAGCTCTAAGAGAAGATTCCAATGATAATTGCTTGTTTTATCCCACAGTTTTGGACATTAGTCGTGATAATTTTGAACACTTTCAGAAGCACTGGAGAAAAGGCCATCCAGTAGTAGTGCGAGATGTTCTCCAAAGTAAATCAAACTACAGCTGGGACCCGCTGGTCATGTTCTGTTCATATCTTGAGCAGAGTATCACAAGATATCAGAATGATAAGGACTTACTTGAAACTTGTTTGGATTGGTGTGAGGTAGAAATTAACTTTAAGCACTATTTTTCTGGGTCACTAAGATGTCAACCACAGAAAAATACTTGGCATGAGATGCTGAAACTGAAGGGTTGGTTGTCTTCCCAACTATTCAAAGAACAGTTTCCAACTCATTTTGCTCAAGTGATTGCTGCCCTACCACTTCAAGAGTACATGAATCCCATGTCTGGTATTCTGAATTTAGCAGCAAATTTGCCACAAGGGAGTGCAAAACATGACATAGGGCCGTTTGTCTATATGTCATATGGCTGTGCTGATGAACAAGTTGATTCTGTAACAAAACTCTGTTATGACTCATATGATGTGGTTAATATCATGGCGCATTCAACAGATGTCCCTCTCTCTTCAGAACAACTTACTAAAATAAGAAAGTTGTTGAAAAAGCACCAAAATCTGTGTCAAACTGAGTCTCCCAGAATTATTACTGAGAAGATAATGGGCGACAGTTTGAAAGAAAACTCATTATTGCACGCTGAAGACAAGGAACAAAATGGAGTGCAGAGTATGGTTAGAGAAGAAATGAATTTCTTCCGGAGAGTTGACAGAACAACATATATCTCTACAGAGGCAGGAAAGGAAGCTAGGACAGCACAGGACACTCCATTGTCAACGTTTGGTAATCCCAGATATTCCAGTGATAGCTCAAATAACGATAGGACTAGAAGCCTTGCTGATCATTCTGGTGCTCAGTGGGATGTATTTCGCAGACAAGATGTTCCAAAACTAATAGAATACCTTAAACGACATTGTATTGAATTTGCTGATACCCAGAACTACCAAAAGAAGATGATTCACCCAATTCTAGATCAGATCTTCTTTCTTGACAATACTCACAAAATGAGGCTTAAGGAGGAGTTTGAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTGCTGGATGTCCATATCAGATCAAGAATCCAAAGTGTTGTGTTCATGTGATACTTGAATTTGTGTCCCCTGAAAATGTTACCGAGTCTATTGAATTGATTGATGAAGTCCATCTGCCTCCTGAGGGACATATAGCAAAAGTGGATAAGCTGGAGATGAAGAAAATGGCCCTTTACAGCATGAGAACAGCGATAAAAGAAATAGGAGATCTTACATATAAAAAGTGA 2847 0.412 MVEEEGVLPDHLRCSRTDGRQWRCRRRVMDNLKLCEIHYLQGRHRQYKEKVPESLKLQRKRKNGSNDSKNDAFVLDNVEIRALNIGKKANLIKKRPKFWDSSEAVDAHPVKKKALKQGGMQLELIRIVLKREIEKRKKKQRKNKKEEEEEEGGGELIHYSEGERELTRELPNGVMAISSASTPQDYNNVSSYCDVKVGIDHKAITPRYFRSKNVEKLPAGKLQVLPLGQNLKKFRRKKCHWCQKSDSWNLIKCSSCQKEFFCMDCIKERYFETQNEVKMTCPVCRGTCSCKDCLASQCKESESKEYLASKGRVDRILCFHYMICMLLPLLKQISEDNNIELAKSKSKEKRTSDILIKEVEFRCNEQNCWIPIKLKDGIASENHLLDVISNGNSTATSSPDCTICNGSGNLSCPPPELGGYGDCLLDLRCVFPISLIREMETKAEEISCCFDFPESLDKSSSCSLCLSSDNKIGRYKQWQEAALREDSNDNCLFYPTVLDISRDNFEHFQKHWRKGHPVVVRDVLQSKSNYSWDPLVMFCSYLEQSITRYQNDKDLLETCLDWCEVEINFKHYFSGSLRCQPQKNTWHEMLKLKGWLSSQLFKEQFPTHFAQVIAALPLQEYMNPMSGILNLAANLPQGSAKHDIGPFVYMSYGCADEQVDSVTKLCYDSYDVVNIMAHSTDVPLSSEQLTKIRKLLKKHQNLCQTESPRIITEKIMGDSLKENSLLHAEDKEQNGVQSMVREEMNFFRRVDRTTYISTEAGKEARTAQDTPLSTFGNPRYSSDSSNNDRTRSLADHSGAQWDVFRRQDVPKLIEYLKRHCIEFADTQNYQKKMIHPILDQIFFLDNTHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIKNPKCCVHVILEFVSPENVTESIELIDEVHLPPEGHIAKVDKLEMKKMALYSMRTAIKEIGDLTYKK 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr21g00009 948 Gene3D Cupin 496 919 - -
Accr21g00009 948 MobiDBLite consensus disorder prediction 759 793 - -
Accr21g00009 948 SUPERFAMILY Clavaminate synthase-like 503 931 - -
Accr21g00009 948 Pfam JmjC domain, hydroxylase 797 891 IPR003347 -
Accr21g00009 948 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 392 947 IPR045109 GO:0032454|GO:0033169
Accr21g00009 948 ProSiteProfiles JmjC domain profile. 624 911 IPR003347 -
Accr21g00009 948 SMART cupin_9 605 911 IPR003347 -
Accr21g00009 948 Pfam WRC 9 50 IPR014977 -
Accr21g00009 948 ProSiteProfiles Zinc finger RING-type profile. 239 285 IPR001841 -
Accr21g00009 948 Coils Coil 129 151 - -
Accr21g00009 948 MobiDBLite consensus disorder prediction 141 156 - -
Accr21g00009 948 ProSiteProfiles WRC domain profile. 8 54 IPR014977 -
Accr21g00009 948 MobiDBLite consensus disorder prediction 135 156 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr21g00009 9 48 GRF Transcription Factor Family AT2G22840 50.000 1.98e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Accr21g00009 JmjC 2.3e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr21g00009 K15601 - gmx:100810673 1184.09