Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr21g00006 ATGGATTTTAATAGTGAAGAAATTGGTGCAGGAAAGAGAGCGGCAGAAGACGAACCTGTGAAGCAAGTGACTGCAAAGAAGCAGAAGAGAGACTGGGTTGGTGAAAATCAAAAGGAGGAAAGCAATTCAGACGATTCCTTTTCAGATTCTGGAAACTCAGATGAAGATTCTGGTTTGAATTATTCCAAGGTAGCCCCTGCTGAAGGTAGGAGTGGGCTTGGTGCTATAAAGAAGAAAGGCAAATCAGGGTCAGATTCAGGGAGTAGCTCCATAGACAAAGATGATAAAACAACAGATGCAGCCATATTGCCTGAGAAATTACCTGATACTGCTAAGAAAGAACTTGCTAAGAAAGTTTATTCAAGTAAAGCCTCAGGCCTAGATTCTGACAGCGGAGCTAATAAGGATATGGACAATGTAACCACATCATCGAAGAAGTTGCTTGCTACTTCTACTGCAGATAATAATATATCTATTAAGAAGGTTGAGTCAAGCAATGACCCGTCCCATGATAGTGGCTTAGATGAGGATAATGTGGCCCATAAAACACATGTAACACCGCCATCCAAGAAGCTGCTAGCTTCTGCTGTTGTACATAGGGAGGGAATTGAGAAAAATGACAACTCCCATGATGCATCAAGAGAAGGATTTGATAGATGCAAGGTTTCAGAAGAAAACGAGATCAAGGATAAACCTTCTGTAACTCCTCGGAAAGATCCTAAAACAGTATTTACTCCGGAAAAACAAGATGCCGCGTCAAAAAAAATATTTGTTGGGAACTTATCATATGAGGTGAAAAGGACCAATTTGGAAAATTTATTTAAGCATTGTGGAGAAATTGTTGATGTCTCTTTTGGTTTATATCGTGATGGGACGTTTAGAGGTTTTGCTCATGTTGAGTTTGCCACTGAAGAAGCTGCTCATAATGCCCTTATGTTGAATGGGACTGAGCTATTAAGACGTTTAGCCAGAATTGAGATAGCCCATGAAAAGTTTGCATATACCCCTAATAGCAGTTGTATGAACTGGAACGACTCATTGAAGGGTTTTCAAGCATCCTTTGGAGAAGATGAGCCTACCATGTCAGCTACCTCAAAAGAACAAAATGCTACATCGAGGATGCTTTTTGTTGGAAACTTGTCATATAGTGTGGAAAAGGATGATTTGGAAAATTTATTCCAAGATTGTGGAGAAGTTGTTGATATTCGTTTTGCCACAGATCGTGAAGGGAGGTTTAAAGGCTTTGCACATGTTTTGTTTGCCAATGAAGAAGCAGCACAAACTGCCCTTATGTTGAATGGGAAGGAATTGTTGAGGCGTTCTCTTAGGCTTAATCTAGCTCCTAAAAGGGCTGCATATTCCTGCAGTAGCAGCAACAGGAATGAATTATTTCAAGAGGATATATCATTAGGGGGAAATGAGGCTAAAATGCCAGCTGCTCCAAAAGAACAAAATGCGGCATCAAAGACAGTATTTGTTGGAAACTTGTCATATAGCGTGGAAAGGGCTGATTTGGAAAATTTATTTAAAGATTGTGGAGATATTCTTGATATCCGCTTAGCTACAGATCGTGAAGGGAGGTTTAAAGGATTTGGACATGTTGAGTTTGCCACTCCAGAAGCAGCACAAAATGCCCTTAAGTTGAATGGAACCAAACTGTTGAGACAATATATAAAACTTGATTTGGCAAATGAAAAGATTGTGCATTCTTCCAATAGCAGTATTGGTGGGAACAGAGACGACTCTGGAAATGTTGAGTCTCAAACAGTGTTTGTAAGGGGTTTTGATACATCCTTAAGAGAAGATGAGATTAGAACTAGCCTGGAAGAGCATTTCAAATCTTGTGGAATAATTTCCAGGATATCAATTGCAAGAGATTATGGCACTGGTTCTACTAAGGGGTATGCTTGGATAGACTTCATGGATGTTGATGGCTTCAATAAAGCACTAGAACTAGATGGAACTGAGGTTGTAGGTTGTGCATTGTCAGTGGAGAAAAGAAGACCTCGGCGCTATATTCAAGATGGTAGAGTTGGTGGTGATCAATTAGGTGGATGGCATGGTGGTGGTGGACGGTGTGGTGGTGATCGATTTGGTGGTGGATGGCGTGGTGGTGATCAATCTGGTGGATGGCATGGAGGTGGCCAATGGGATCATGGAAGAGGTTATGGCCGGAGGTGGCATTGA 2187 0.4106 MDFNSEEIGAGKRAAEDEPVKQVTAKKQKRDWVGENQKEESNSDDSFSDSGNSDEDSGLNYSKVAPAEGRSGLGAIKKKGKSGSDSGSSSIDKDDKTTDAAILPEKLPDTAKKELAKKVYSSKASGLDSDSGANKDMDNVTTSSKKLLATSTADNNISIKKVESSNDPSHDSGLDEDNVAHKTHVTPPSKKLLASAVVHREGIEKNDNSHDASREGFDRCKVSEENEIKDKPSVTPRKDPKTVFTPEKQDAASKKIFVGNLSYEVKRTNLENLFKHCGEIVDVSFGLYRDGTFRGFAHVEFATEEAAHNALMLNGTELLRRLARIEIAHEKFAYTPNSSCMNWNDSLKGFQASFGEDEPTMSATSKEQNATSRMLFVGNLSYSVEKDDLENLFQDCGEVVDIRFATDREGRFKGFAHVLFANEEAAQTALMLNGKELLRRSLRLNLAPKRAAYSCSSSNRNELFQEDISLGGNEAKMPAAPKEQNAASKTVFVGNLSYSVERADLENLFKDCGDILDIRLATDREGRFKGFGHVEFATPEAAQNALKLNGTKLLRQYIKLDLANEKIVHSSNSSIGGNRDDSGNVESQTVFVRGFDTSLREDEIRTSLEEHFKSCGIISRISIARDYGTGSTKGYAWIDFMDVDGFNKALELDGTEVVGCALSVEKRRPRRYIQDGRVGGDQLGGWHGGGGRCGGDRFGGGWRGGDQSGGWHGGGQWDHGRGYGRRWH 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr21g00006 728 MobiDBLite consensus disorder prediction 164 184 - -
Accr21g00006 728 Gene3D - 454 573 IPR012677 -
Accr21g00006 728 Gene3D - 195 334 IPR012677 -
Accr21g00006 728 Gene3D - 344 453 IPR012677 -
Accr21g00006 728 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 489 565 IPR000504 GO:0003723
Accr21g00006 728 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 321 IPR000504 GO:0003723
Accr21g00006 728 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 590 662 IPR000504 GO:0003723
Accr21g00006 728 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 491 558 IPR000504 GO:0003723
Accr21g00006 728 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 375 442 IPR000504 GO:0003723
Accr21g00006 728 SUPERFAMILY RNA-binding domain, RBD 245 334 IPR035979 GO:0003676
Accr21g00006 728 SUPERFAMILY RNA-binding domain, RBD 366 453 IPR035979 GO:0003676
Accr21g00006 728 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 373 449 IPR000504 GO:0003723
Accr21g00006 728 MobiDBLite consensus disorder prediction 203 243 - -
Accr21g00006 728 SUPERFAMILY RNA-binding domain, RBD 583 694 IPR035979 GO:0003676
Accr21g00006 728 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 17 366 - -
Accr21g00006 728 SMART rrm1_1 255 326 IPR000504 GO:0003723
Accr21g00006 728 SMART rrm1_1 490 561 IPR000504 GO:0003723
Accr21g00006 728 SMART rrm1_1 589 665 IPR000504 GO:0003723
Accr21g00006 728 SMART rrm1_1 374 445 IPR000504 GO:0003723
Accr21g00006 728 MobiDBLite consensus disorder prediction 1 45 - -
Accr21g00006 728 MobiDBLite consensus disorder prediction 88 119 - -
Accr21g00006 728 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 330 IPR000504 GO:0003723
Accr21g00006 728 Gene3D - 577 725 IPR012677 -
Accr21g00006 728 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 588 669 IPR000504 GO:0003723
Accr21g00006 728 MobiDBLite consensus disorder prediction 124 163 - -
Accr21g00006 728 MobiDBLite consensus disorder prediction 1 190 - -
Accr21g00006 728 SUPERFAMILY RNA-binding domain, RBD 481 582 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr21g00006 375 656 Eukaryotic Initiation Factors Gene Family AT2G36660 24.407 2.16e-11 65.1