Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr20g00042 ATGGGGCTCCGTCACCGGAAGATTCTCGAAGAAATATGCTATATTTACTGCAACTCTTCTTGTTCATCCCCCGATTGCAAAGGATGTCTCATCAACTGCTCCGCCGAGGAGCCGCCGATTTACTACACCCCACCACCTCCGGTCTTCGACGACTACGTTGATCTCAATGATCCCAGCAAAATCCACCACAAGATCGCCACCTGGTTGACCGTCGTGATCGCTGTTCTGTCTGCCGCCTTCTTCGCCCTCCTCTGCTTCGTCGTCTACCGGAGATTCCTCTTCGGCTGTTTCAGGAGAAGGAGCTCGGAGACGTCGCCGGAGGAGTCTCGTCGGGGAGATTTTCTCGATGAGGAAGGGGGCCCTATTGTGGATCATCCCATATGGTATATTCGAACCCCTGGTCTTCAACAATCGGTAATTTCTGCGATTACTGTAGTTAAGTATAAGAAAGGGGAAGGGTTAATTGATGGAACAGAGTGCTCTGTTTGTTTGAGTGAGTTTGAAGAAGACGAGAATCTCAGGCTTTTGCCTAAGTGTAATCACGCTTTCCATCTTCCTTGTATTGATACTTGGCTTCGATCTCACACTAACTGCCCCATGTGCCGAGCTCCGATCGTCACCAACCCCACCACCGTCATCGCCTCACCGGAGCCAAATATTGCTGCTTTGACTGATTCAGAAGAACCCCAGATGGAAAGGGTTGAAAATGGGGGTGAAAATAGTAGTGGGGTTGTGGAGAACAGTGATGATGAGTTGAGAAATAGAGGTGAGGACGAAGAAGAAGGAGGAGCAAGAAGAAGAGAAATTGTTGATGAAGAGGAAGTGGGGAATTTGCAGCCAAGAAGAAGATCTGTGTCTTTGGATTCTTCAGCTGTTGAGAACATCAATCGAGCTCTTGCTAGAGCTAATAACAATCCTGTTGTGGGACCATCTTCATCTTCTTCATCCTCATCAAAGAAGGTTTCGAAAAGTGGTTCTTCTTCTTTCAGGTTGAAGTCTCTTCAGATTGTTGCAGGCACTTCAATGAAGAGATCTCGTTCCTACAATGGGAAAAATGTACATTCTTGGTACAGTCGAAGTCAGAGGAAGCCAAGTGCTCCTATTAGAAGCTTTTGA 1116 0.4731 MGLRHRKILEEICYIYCNSSCSSPDCKGCLINCSAEEPPIYYTPPPPVFDDYVDLNDPSKIHHKIATWLTVVIAVLSAAFFALLCFVVYRRFLFGCFRRRSSETSPEESRRGDFLDEEGGPIVDHPIWYIRTPGLQQSVISAITVVKYKKGEGLIDGTECSVCLSEFEEDENLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTNPTTVIASPEPNIAALTDSEEPQMERVENGGENSSGVVENSDDELRNRGEDEEEGGARRREIVDEEEVGNLQPRRRSVSLDSSAVENINRALARANNNPVVGPSSSSSSSSKKVSKSGSSSFRLKSLQIVAGTSMKRSRSYNGKNVHSWYSRSQRKPSAPIRSF 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr20g00042 371 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 63 210 IPR044675 -
Accr20g00042 371 SMART ring_2 160 201 IPR001841 -
Accr20g00042 371 MobiDBLite consensus disorder prediction 222 289 - -
Accr20g00042 371 SUPERFAMILY RING/U-box 153 208 - -
Accr20g00042 371 Pfam Ring finger domain 159 202 IPR001841 -
Accr20g00042 371 CDD RING-H2_EL5-like 159 202 - -
Accr20g00042 371 MobiDBLite consensus disorder prediction 301 371 - -
Accr20g00042 371 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
Accr20g00042 371 FunFam RING-H2 finger protein ATL54 135 208 - -
Accr20g00042 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 209 IPR013083 -
Accr20g00042 371 MobiDBLite consensus disorder prediction 246 279 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr20g00042 105 351 C3H Transcription Factor Family AT4G33565 42.972 5.25e-44 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr20g00042 - - pcin:129285126 525.398