Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr20g00020 ATGACGAGAAAGAAGATAGAGATAAAGAAGATAGATAACATAACATCGAGGCAAGTGACATTCTCAAAGAGAAGAAGAGGGCTTTTCAAGAAAGCTAAGGAACTTGCGACGCTTTGTGATGCTGAGATTGGTCTCATTGTCTTTTCTTCCACTGGAAAGCTCTACGACTATGCTAGCTCAAGTATGCAGCAGCTAACTCAAAGGCATGATATGTATTTAGACATTCACAGATCTGATCAACCTGGTATTAATTTGCAAATTGGGAGTGAAGGCTACAATAGGCTATGCCATGAAATTGAAGACAAAACTCGTGAACTTAGACAGTTGAAAGGGGAAGAGTTGCAAGAATTAACAATTCAGGAATTACAGAAACTAGAGGAACTGCTTCGAATGAGTTTGATTAGCATTTCAAAGGCAAAGGATGAAGTAAATGTAAAAGAGATCCGCGAGCTCAAGAAACAGGAAAAACAATTGATGGTAGATAACAGCAGATTGGAACAGGTAATACATGAACAAGGACGATCATCTGATTCAATGATTTTGTCCAGCTCACCTGATTGTCCTCAACATACAGAGGATTTTGATACATCTCTCAAGTTGGGGTTTCATTGA 612 0.3873 MTRKKIEIKKIDNITSRQVTFSKRRRGLFKKAKELATLCDAEIGLIVFSSTGKLYDYASSSMQQLTQRHDMYLDIHRSDQPGINLQIGSEGYNRLCHEIEDKTRELRQLKGEELQELTIQELQKLEELLRMSLISISKAKDEVNVKEIRELKKQEKQLMVDNSRLEQVIHEQGRSSDSMILSSSPDCPQHTEDFDTSLKLGFH 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr20g00020 203 Pfam K-box region 91 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr20g00020 203 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr20g00020 203 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Accr20g00020 203 Coils Coil 92 112 - -
Accr20g00020 203 Coils Coil 148 168 - -
Accr20g00020 203 MobiDBLite consensus disorder prediction 171 203 - -
Accr20g00020 203 CDD MADS_MEF2_like 3 80 IPR033896 GO:0000977|GO:0045944
Accr20g00020 203 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Accr20g00020 203 MobiDBLite consensus disorder prediction 172 191 - -
Accr20g00020 203 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr20g00020 203 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Accr20g00020 203 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Accr20g00020 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Accr20g00020 203 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr20g00020 203 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr20g00020 203 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr20g00020 203 Coils Coil 122 142 - -
Accr20g00020 203 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr20g00020 1 202 MADS-box Gene Family AT2G22540 42.797 2.42e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Accr20g00020 K-box 2.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr20g00020 - - gmx:100812951 210.305