Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr20g00019 ATGACGAGGCAGAAGATAGAAATAAAGAAGATAGATAACATAACAGCGAGGCAAGTGACGTTTTCAAAGAGAAGAAGAGGGCTTTTTAAGAAAGCTCGGGAGCTCTCTACTCTCTGTGACGCTGAGATTGCTCTCATAGTCTTTTCTTCTACTGGCAAGCTCTTTGATTATGCTAGCTCAAGCGTGCAGCAGGTTATTGAAAGGCGTGGTATGCTCTCAGAAACTGAAAGATTAGACCATCCTTCTATAGAGTATGACAGGGACACCTTAAGCATGCTCAGCAAGGAAGAAGCCAATAAGGTTAGGGAACTGAGGCAGTTGAATGGAGAAGAGCTTGAAGGATTGAACACAAATGAATTACAGAAGCTTGAAGAGCAATTAGAAAAAGGTTTAAGACGTGTTTCCAAAGCAAAGGATGAACTAATGTTTAAAGGGCTCGATGAGCTCAAGAGAAAGAGAACCCAATTGATGGAAGAGAACCAGCGATTAAAACAGGTGATGAGGAATGTTGCACAAGAACAAGGTCAGTCATCTGAGTCAGTCAATATTGGCAGCATATTTGATCCTCCACTTGAGGATGATAGTTCAGACACTTCTCTCAGATTGGGATTGTCCTTGTTTAAATGA 627 0.4147 MTRQKIEIKKIDNITARQVTFSKRRRGLFKKARELSTLCDAEIALIVFSSTGKLFDYASSSVQQVIERRGMLSETERLDHPSIEYDRDTLSMLSKEEANKVRELRQLNGEELEGLNTNELQKLEEQLEKGLRRVSKAKDELMFKGLDELKRKRTQLMEENQRLKQVMRNVAQEQGQSSESVNIGSIFDPPLEDDSSDTSLRLGLSLFK 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr20g00019 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Accr20g00019 208 CDD MADS_MEF2_like 3 68 IPR033896 GO:0000977|GO:0045944
Accr20g00019 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr20g00019 208 Coils Coil 120 140 - -
Accr20g00019 208 ProSiteProfiles K-box domain profile. 83 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr20g00019 208 FunFam Transcription factor, MADS-box 13 82 - -
Accr20g00019 208 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Accr20g00019 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Accr20g00019 208 MobiDBLite consensus disorder prediction 169 198 - -
Accr20g00019 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Accr20g00019 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr20g00019 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr20g00019 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr20g00019 208 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Accr20g00019 208 Pfam K-box region 87 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr20g00019 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Accr20g00019 208 Coils Coil 146 176 - -
Accr20g00019 208 MobiDBLite consensus disorder prediction 169 184 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr20g00019 1 204 MADS-box Gene Family AT2G22540 49.576 5.78e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Accr20g00019 K-box 2.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr20g00019 - - cave:132179373 204.912